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Is the Human Brain a Null Hypothesis for Darwinian Evolution?

Can the Evolution of the Human Brain be a Basis for a Null Hypothesis of Darwinism?


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VirOptimus

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Define science and then when you are done you can define evolution. Then we can talk like adults who take the subject matter seriously instead of fielding these pedantic, fallacious one liners.

Have a nice day :)
Mark

If you dont even know the terms I cant help you. Im not responsible for your education.
 
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Loudmouth

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That's not how Molecular Phylogentics works, you are either oblivious or otherwise unaware that these kind of phylogenetic trees go back to Linnaeus and Darwin.


Molecular phylogenetics goes back to Linnaeus and Darwin? Seriously? Do you even think about these things?

DNA wasn't even discovered until the 1950's. The first DNA sequences were read in the early 1970's.

I have enjoyed reading about phylogentics for years, these taxonomic schemes while fascinating do not prove anything. They are a semantic systematic organization.

You need more than just denial. Explain why they don't prove anything. Explain why evolution would not produce a branching pattern of shared and derived features. Explain why evolution would not produce matching phylogenies of morphology and DNA sequences.

There is no we, it's just you using a worn out Talk Origins argument that proves nothing either way.

I have shown you the peer reviewed papers where they infect cells and map the ERVs produced by the retrovirus.

"The completion of the human genome sequence has made possible genome-wide studies of retroviral DNA integration. Here we report an analysis of 3,127 integration site sequences from human cells."
http://www.ncbi.nlm.nih.gov/pubmed/15314653

That's 3,000 observed ERVs produced by retroviruses in just one study. Directly observed. Why do you keep ignoring this? This is from a real peer reviewed paper and not talkorigins, by the way.

Waiting for you to start an exposition of relevant source material.

I JUST CITED A PAPER DESCRIBING THE DIRECT OBSERVATION OF RETROVIRUSES CREATING ERVS. How is that not relevant?

It's not we it's you and it's a homology argument, phylogentic arguments are a homology argument if you assume common ancestry based on similar traits or alleles.

That is a flat out lie. Phylogenetic arguments are not homology arguments. Sorry, but you don't get to play these semantic games as an excuse for ignoring the evidence.

At every turn, a beneficial effect is on of the rarest of mutations.

How is that a problem?

Ok we can take a look at this:

The completion of the human genome sequence has made possible genome-wide studies of retroviral DNA integration. Here we report an analysis of 3,127 integration site sequences from human cells. We compared retroviral vectors derived from human immunodeficiency virus (HIV), avian sarcoma-leukosis virus (ASLV), and murine leukemia virus (MLV).(Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences.)​

It seems to be these are viral infections with highly deleterious effects.

It seems to you? Where is your evidence?

You wanted proof, it's in the abstract of you own source material. HIV is an especially deadly one that integrates itself into T cells with devastating consequences.

You can show that this is true for every single HIV insertion? Where is your evidence?

How many times do you want me to read this paper? It's from 1999 and assumes these sequences are the result of germline viral invasions and includes an abstract, methodology then jumps right into a discussion.

That's like saying that you have to assume a suspect is guilty in order to get a DNA match.

Don't you understand? The ERVs are proof that these germline invasions occurred. ERVs are the DNA evidence left over from germline invasions. It is the same as a suspect leaving DNA at the scene of a crime.

It's nothing but broken reading frames.

Broken reading frames that share a lot of homology with retroviruses known to insert into host genomes. Where is the problem here?

Because that's what taxonomy is, systematic semantics.

You are just avoiding the evidence.

Because they represent over 90 million base pairs, some millions of base pairs long.

nature04072-f6.2.jpg

Both the total number of candidate human insertions/chimpanzee deletions (blue) and the number of bases altered (red) are shown. FIGURE 6. Length distribution of large indel events (> 15 kb), as determined using paired-end sequences from chimpanzee mapped against the human genome.



90 million base pairs of divergence, some sequences in the millions of base pairs that include the sequence that includes the HAR1f sequence and Pterv sequence that represent at least a million base pairs. I see a problem with the absence of an argument for this even being conceivable.

What argument needs to be made? Those are the mutations that accumulated in both the chimp and human genomes. Where is the problem? What is so inconceivable? We can directly observe every type of mutation being made in today's human population, so where is the problem?

Yes the have made direct comparisons and found 40,000 differences in the 20,000 genes representing one change per gene, per lineage in each of the genomes respectively.

~29% being identical and the typical orthologue differing by only two amino acids, one per lineage. (Chimpanzee Genome, Nature 2005)​

What is fascinating is how many fundamentally flawed statements you make.

And how does this refute the argument that human and chimp genes are 98% homologous on average?

A criminal's DNA identifies him, the argument you are using is a comparison of genomic sequences.

THAT'S EXACTLY WHAT DNA FINGERPRINTING IS!!!!!!!!

They compare the genome found at the crime scene with the suspect's genome. That's what identifies him. For crying out loud!!!!

To say nothing of the fact you keep saying we when you are doing nothing but making a worn out homology argument to an empty theater.

THAT IS A LIE!!!

I am making a phylogenetic argument, not a homology argument.

Don't need them, I know what the rate of permanently fixed, highly deleterious germ line invasions risk. It's a formula for extinction, not adaptive evolution and you have utterly abandoned the comparative anatomy and molecular basis for the evolution of the human brain from that of apes. This is a red herring, nothing more.

You "know"??????

No references. No sources. Just your say-so. Yeah, right.


We can talk about the deleterious effects of mutations any time

You are the one who claims that every single mutation is deleterious. Lets see your proof.
 
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mark kennedy

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Molecular phylogenetics goes back to Linnaeus and Darwin? Seriously? Do you even think about these things?

DNA wasn't even discovered until the 1950's. The first DNA sequences were read in the early 1970's.

You are all over the road, the taxonomic philosophy you are appealing to has a long history and you could care less about the substantive foundation. It's sad really.

You need more than just denial. Explain why they don't prove anything. Explain why evolution would not produce a branching pattern of shared and derived features. Explain why evolution would not produce matching phylogenies of morphology and DNA sequences.

I need nothing of the sort, you have one paper published before the human genome paper that proves nothing.

I have shown you the peer reviewed papers where they infect cells and map the ERVs produced by the retrovirus.

No you didn't, you just echoed their naturalistic assumptions and I have yet to see even the most cursory exposition. Actually not so much as a quote or even a proper citation. You have nothing as usual.

"The completion of the human genome sequence has made possible genome-wide studies of retroviral DNA integration. Here we report an analysis of 3,127 integration site sequences from human cells."
http://www.ncbi.nlm.nih.gov/pubmed/15314653

You have:

We compared retroviral vectors derived from human immunodeficiency virus (HIV), avian sarcoma-leukosis virus (ASLV), and murine leukemia virus (MLV).
ERVs that have severely deleterious effects. If this is going to have devastating consequences somatic cells it would be amplified by orders of magnitude in germ cells and that is painfully obvious.

That's 3,000 observed ERVs produced by retroviruses in just one study. Directly observed. Why do you keep ignoring this? This is from a real peer reviewed paper and not talkorigins, by the way.

Ignoring it? I'm basing my argument on it.

I JUST CITED A PAPER DESCRIBING THE DIRECT OBSERVATION OF RETROVIRUSES CREATING ERVS. How is that not relevant?

Because they are not germ line invasions and they have devastating deleterious effects. That's why LM!

That is a flat out lie. Phylogenetic arguments are not homology arguments. Sorry, but you don't get to play these semantic games as an excuse for ignoring the evidence.

That's a flat out fallacy, if it's an argument from similarity thought to be from common descent it's called homology. You don't know your semantics, even when you are playing a semantically based shell game.

How is that a problem?

Gross lack of substance...

snip the pedantic one liners...

Don't you understand? The ERVs are proof that these germline invasions occurred. ERVs are the DNA evidence left over from germline invasions. It is the same as a suspect leaving DNA at the scene of a crime.

Identification of someone based on DNA and lineage are two very different things. A typical equivocation fallacy.

Broken reading frames that share a lot of homology with retroviruses known to insert into host genomes. Where is the problem here?

You don't know the meaning of science, evolution or how the term homology is used in biology and you are trying to make a homology argument. That's the problem.

You are just avoiding the evidence.

No, you just don't have any.

What argument needs to be made? Those are the mutations that accumulated in both the chimp and human genomes. Where is the problem? What is so inconceivable? We can directly observe every type of mutation being made in today's human population, so where is the problem?

You don't get to draw a conclusion based on a false assumption.

And how does this refute the argument that human and chimp genes are 98% homologous on average?

Only 29% are identical and on average each lineage requires a single amino acid substitution. Impossible given the deleterious nature of mutations and the enormity of change required.

THAT'S EXACTLY WHAT DNA FINGERPRINTING IS!!!!!!!!

Nonsense!!!!!

They compare the genome found at the crime scene with the suspect's genome. That's what identifies him. For crying out loud!!!!

No it's not!!!

THAT IS A LIE!!!

NO ITS NOT!!!! See how easy that is?

I am making a phylogenetic argument, not a homology argument.

You don't have an argument, I was being generous calling it a homology argument.

You "know"??????

No references. No sources. Just your say-so. Yeah, right.

Melted down quick on this one. It's so much fun watching it boil down to nothing so fast.

You are the one who claims that every single mutation is deleterious. Lets see your proof.

That's a strawman argument, we can talk about the effects of mutations when you finally start using source material and actually talking about mutations.

You actually had a point in there but I would be willing to bet you will never know what it was. I promise you, I will never be the one to tell you.

This has been like a gift... sooooo much fun. Thanks LM.

Have a nice day :)
Mark
 
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46AND2

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You are all over the road, the taxonomic philosophy you are appealing to has a long history and you could care less about the substantive foundation. It's sad really.



I need nothing of the sort, you have one paper published before the human genome paper that proves nothing.



No you didn't, you just echoed their naturalistic assumptions and I have yet to see even the most cursory exposition. Actually not so much as a quote or even a proper citation. You have nothing as usual.

"The completion of the human genome sequence has made possible genome-wide studies of retroviral DNA integration. Here we report an analysis of 3,127 integration site sequences from human cells."
http://www.ncbi.nlm.nih.gov/pubmed/15314653

You have:

We compared retroviral vectors derived from human immunodeficiency virus (HIV), avian sarcoma-leukosis virus (ASLV), and murine leukemia virus (MLV).
ERVs that have severely deleterious effects. If this is going to have devastating consequences somatic cells it would be amplified by orders of magnitude in germ cells and that is painfully obvious.



Ignoring it? I'm basing my argument on it.



Because they are not germ line invasions and they have devastating deleterious effects. That's why LM!



That's a flat out fallacy, if it's an argument from similarity thought to be from common descent it's called homology. You don't know your semantics, even when you are playing a semantically based shell game.



Gross lack of substance...

snip the pedantic one liners...



Identification of someone based on DNA and lineage are two very different things. A typical equivocation fallacy.



You don't know the meaning of science, evolution or how the term homology is used in biology and you are trying to make a homology argument. That's the problem.



No, you just don't have any.



You don't get to draw a conclusion based on a false assumption.



Only 29% are identical and on average each lineage requires a single amino acid substitution. Impossible given the deleterious nature of mutations and the enormity of change required.



Nonsense!!!!!



No it's not!!!



NO ITS NOT!!!! See how easy that is?



You don't have an argument, I was being generous calling it a homology argument.



Melted down quick on this one. It's so much fun watching it boil down to nothing so fast.



That's a strawman argument, we can talk about the effects of mutations when you finally start using source material and actually talking about mutations.

You actually had a point in there but I would be willing to bet you will never know what it was. I promise you, I will never be the one to tell you.

This has been like a gift... sooooo much fun. Thanks LM.

Have a nice day :)
Mark

How many times are you two going to rehash the same arguments. You've been going on about the same stuff for years.
 
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mark kennedy

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How many times are you two going to rehash the same arguments. You've been going on about the same stuff for years.

It's all he has but I maintain an interest because genomic research fascinates me. While he is rehashing the same argument from the same source material I'm enjoying an online book. Genomes. 2nd edition. One of those online gems I probably would never have found had it not been for these mildly interesting debates.

It's a little awkward for a Creationist to sort through the research since my world view is a much shorter timeline so there is no millions of years ago in real history. The nice thing is that natural history is a very minor aspect of modern genetics since it focuses living systems not dead ancestors. I went back and reread this paper:

With more than 100 members, CERV 1/PTERV1 is one of the most abundant families of endogenous retroviruses in the chimpanzee genome. CERV 1/PTERV1 (Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses)
It's a highly detailed discussion of the 42 families of ERVs and being kind of a genetics buff it's interesting to glean again what I can from the paper. I rarely learn anything from the posters, sadly they are woefully ignorant of the large body of work they think they argue for and from. But I always learn something even if it is started from a tired old argument he never pursued beyond the surface.

If you dont even know the terms I cant help you. Im not responsible for your education.

I know exactly what the term means as well as the history and philosophy of modern science. You don't have a clue what the term means but you want to pretend you are arguing for and from science. Your not, now why don't you find a definition of science and when you are done you can look up evolution. Then you can use terms you actually understand which will help to alleviate your dependence on pedantic, fallacious arguments from science, falsely so called.

Have a nice day :)
Mark
 
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46AND2

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It's really all


It's all he has but I maintain an interest because genomic research fascinates me. While he is rehashing the same argument from the same source material I'm enjoying an online book. Genomes. 2nd edition. One of those online gems I probably would never have found had it not been for these mildly interesting debates.

Your argument hasn't changed, either.

"Phylogenetic arguments are not homology arguments. "

"Yes they are."

"No they aren't"

"Yes they are. "

"No they aren't"
 
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VirOptimus

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-snip-

I know exactly what the term means as well as the history and philosophy of modern science. You don't have a clue what the term means but you want to pretend you are arguing for and from science. Your not, now why don't you find a definition of science and when you are done you can look up evolution. Then you can use terms you actually understand which will help to alleviate your dependence on pedantic, fallacious arguments from science, falsely so called.

Have a nice day :)
Mark

Let me guess, you have zero higher education in science but a very strong religious conviction?

I know, because you are not truthful and no, you really dont understand science.
 
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mark kennedy

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Let me guess, you have zero higher education in science but a very strong religious conviction?

I know, because you are not truthful and no, you really dont understand science.

That's right, I have a degree in Liberal Arts with a big interest in theology and philosophy. Let me guess, you don't have a definition for science all you know is that if you are opposed to anything remotely theistic you think you are being scientific. You just don't have a clue what the word means. Define the word, what is science?

You know so much more about science then me then a basic definition should be easy, except you didn't do that, you chose instead a fallacious rhetorical taunt. It never fails.

Have a nice day :)
Mark
 
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mark kennedy

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Your argument hasn't changed, either.

"Phylogenetic arguments are not homology arguments. "

My arguments have very little to do with terminology, thematically it's a homology argument. The classification system termed phylogentic is really relating things by what they do and do not have in common. ERVs are a classic homology argument because it's saying because they have the same mutation in the same place in necessarily due to a common ancestor and there is a probability statistic attached. Call it what you will, it's a homology argument.

"Yes they are."

"No they aren't"

"Yes they are. "

"No they aren't"

That's what happens when you pick a pointless semantical argument and abandon the actual evidence. Nothing of the fossils or genetics just a tangential drift turning ultimately into an ad hominem fallacy. It always ends this way because that is all they have left after the actual evidence is abandoned. Curious, very curious indeed.

Have a nice day :)
Mark
 
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VirOptimus

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That's right, I have a degree in Liberal Arts with a big interest in theology and philosophy. Let me guess, you don't have a definition for science all you know is that if you are opposed to anything remotely theistic you think you are being scientific. You just don't have a clue what the word means. Define the word, what is science?

You know so much more about science then me then a basic definition should be easy, except you didn't do that, you chose instead a fallacious rhetorical taunt. It never fails.

Have a nice day :)
Mark

Im not interested in arguing with you, its pointless as you refuse to learn and are not open to understanding science. You are arguing because of your religion and are dogmatic. That is not how scientific debate works.
 
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mark kennedy

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Im not interested in arguing with you, its pointless as you refuse to learn and are not open to understanding science. You are arguing because of your religion and are dogmatic. That is not how scientific debate works.

No it's not about science and yes, I agree with that attitude it's pointless. Mainly because you didn't even try to make a point you just decided to insult me because of my religion. Since you know so much and I know so little you should be able to define science. Because when you do, whether you post it or not, you'll find that it's essentially:

Rule 1: We are to admit no more causes of natural things than such as are both true and sufficient to explain their appearances.
Rule 2: Therefore to the same natural effects we must, as far as possible, assign the same causes.
Rule 3: The qualities of bodies, which admit neither intensification nor remission of degrees, and which are found to belong to all bodies within the reach of our experiments, are to be esteemed the universal qualities of all bodies whatsoever.
Rule 4: In experimental philosophy we are to look upon propositions inferred by general induction from phenomena as accurately or very nearly true, not withstanding any contrary hypothesis that may be imagined, till such time as other phenomena occur, by which they may either be made more accurate, or liable to exceptions. (Newton, Philosophiæ Naturalis. 1726)
With this definition science went from the deductive logic of Aristotelian Scholasticism to the inductive approach we would recognize as empirical. Even when it was inverted, the definition of science did not change. What does the word mean?

Notice the element of cause and effect, Newton also had an argument for the cause of our solar system:

This most beautiful system of the sun, planets, and comets, could only proceed from the counsel and dominion of an intelligent being. And if the fixed Stars are the centers of other like systems, these, being formed by the like wise counsel, must all be subject to the dominion of One. [...] This Being Governs all things, not as the soul of the world, but as Lord over all: And on account of his dominion he is wont to be called Lord God παντοκρατωρ, or Universal Ruler (Newton, General Scholium)​

Clearly the man who introduced calculus to science and crowned the Scientific Revolution with the Principia believed God was a sufficient to explain the appearance of natural things. Now to suggest God is creator or even designer insights fallacious, inflammatory rhetoric. What changed is the a priori assumption of universal common descent by elusively naturalistic causes:

76.jpg


First forms minute, unseen by spheric glass,
Move on the mud, or pierce the watery mass;
These, as successive generations bloom,
New powers acquire, and larger limbs assume;
Whence countless groups of vegetation spring,
And breathing realms of fin, and feet, and wing.
(The Temple of Nature, Erasmus Darwin)
Conceived in mythic verse, culmination in On the Origin of Species, it would be described as one long argument against creation in the Modern Synthesis:

Lamarck was the first man whose conclusions on the subject excited much attention. This justly-celebrated naturalist first published his views in 1801; he much enlarged them in 1809 in his "Philosophie Zoologique,' and subsequently, in 1815, in the Introduction to his "Hist. Nat. des Animaux sans Vertébres.' In these works he upholds the doctrine that species, including man, are descended from other species. He first did the eminent service of arousing attention to the probability of all change in the organic, as well as in the inorganic world, being the result of law, and not of miraculous interposition. (Darwin, On the Origin of Species)
During the Scientific Revolution atheism was rare, now it's equivocated as science and what changed that was Darwinism. Not science.

Opposition to godliness is atheism in profession and idolatry in practice. Atheism is so senseless and odious to mankind that it never had many professors (Sir Isaac Newton)
It's nothing new for men to reject God in their understanding:

For since the creation of the world God’s invisible qualities—his eternal power and divine nature—have been clearly seen, being understood from what has been made, so that people are without excuse. For although they knew God, they neither glorified him as God nor gave thanks to him, but their thinking became futile and their foolish hearts were darkened. Although they claimed to be wise, they became fools and exchanged the glory of the immortal God for images made to look like a mortal human being and birds and animals and reptiles. (Rom. 1:20-23)
Science means knowledge, literally. But now it's fashionable to reject God as the first cause of the universe and life. Science as we know it came to be an inductive approach to investigating nature, not the a priori assumption of exclusively naturalistic causes, going all the way back to and including the Big Bang.

This controversy isn't between religion and science, it's between essential Christian theism and Darwinian naturalistic assumptions. If you don't make the first assumption of universal common descent there is a second assumption that automatically kicks in that you are therefore ignorant of science. It's called an equivocation fallacy, pretending two very different things are the same.

So the challenge remains, define science. But your not going to do that because you know that when you do God as first cause is perfectly compatible with science, just as Newton did.

Idols of the Theater are those which are due to sophistry and false learning. These idols are built up in the field of theology, philosophy, and science, and because they are defended by learned groups are accepted without question by the masses. When false philosophies have been cultivated and have attained a wide sphere of dominion in the world of the intellect they are no longer questioned. False superstructures are raised on false foundations, and in the end systems barren of merit parade their grandeur on the stage of the world. (Francis Bacon)
Francis Bacon at the dawn of the Scientific Revolution speaks of the idols of the mind, the fourth being the idol of the theater. Today that theater is Darwinism, I'm not ignorant of science as you suppose, I'm opposed to this Darwinian theater of the mind.
Have a nice day :)
Mark

 
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VirOptimus

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No it's not about science and yes, I agree with that attitude it's pointless. Mainly because you didn't even try to make a point you just decided to insult me because of my religion. Since you know so much and I know so little you should be able to define science. Because when you do, whether you post it or not, you'll find that it's essentially:

Rule 1: We are to admit no more causes of natural things than such as are both true and sufficient to explain their appearances.
Rule 2: Therefore to the same natural effects we must, as far as possible, assign the same causes.
Rule 3: The qualities of bodies, which admit neither intensification nor remission of degrees, and which are found to belong to all bodies within the reach of our experiments, are to be esteemed the universal qualities of all bodies whatsoever.
Rule 4: In experimental philosophy we are to look upon propositions inferred by general induction from phenomena as accurately or very nearly true, not withstanding any contrary hypothesis that may be imagined, till such time as other phenomena occur, by which they may either be made more accurate, or liable to exceptions. (Newton, Philosophiæ Naturalis. 1726)
With this definition science went from the deductive logic of Aristotelian Scholasticism to the inductive approach we would recognize as empirical. Even when it was inverted, the definition of science did not change. What does the word mean?

Notice the element of cause and effect, Newton also had an argument for the cause of our solar system:

This most beautiful system of the sun, planets, and comets, could only proceed from the counsel and dominion of an intelligent being. And if the fixed Stars are the centers of other like systems, these, being formed by the like wise counsel, must all be subject to the dominion of One. [...] This Being Governs all things, not as the soul of the world, but as Lord over all: And on account of his dominion he is wont to be called Lord God παντοκρατωρ, or Universal Ruler (Newton, General Scholium)​

Clearly the man who introduced calculus to science and crowned the Scientific Revolution with the Principia believed God was a sufficient to explain the appearance of natural things. Now to suggest God is creator or even designer insights fallacious, inflammatory rhetoric. What changed is the a priori assumption of universal common descent by elusively naturalistic causes:

76.jpg


First forms minute, unseen by spheric glass,
Move on the mud, or pierce the watery mass;
These, as successive generations bloom,
New powers acquire, and larger limbs assume;
Whence countless groups of vegetation spring,
And breathing realms of fin, and feet, and wing.
(The Temple of Nature, Erasmus Darwin)
Conceived in mythic verse, culmination in On the Origin of Species, it would be described as one long argument against creation in the Modern Synthesis:

Lamarck was the first man whose conclusions on the subject excited much attention. This justly-celebrated naturalist first published his views in 1801; he much enlarged them in 1809 in his "Philosophie Zoologique,' and subsequently, in 1815, in the Introduction to his "Hist. Nat. des Animaux sans Vertébres.' In these works he upholds the doctrine that species, including man, are descended from other species. He first did the eminent service of arousing attention to the probability of all change in the organic, as well as in the inorganic world, being the result of law, and not of miraculous interposition. (Darwin, On the Origin of Species)
During the Scientific Revolution atheism was rare, now it's equivocated as science and what changed that was Darwinism. Not science.

Opposition to godliness is atheism in profession and idolatry in practice. Atheism is so senseless and odious to mankind that it never had many professors (Sir Isaac Newton)
It's nothing new for men to reject God in their understanding:

For since the creation of the world God’s invisible qualities—his eternal power and divine nature—have been clearly seen, being understood from what has been made, so that people are without excuse. For although they knew God, they neither glorified him as God nor gave thanks to him, but their thinking became futile and their foolish hearts were darkened. Although they claimed to be wise, they became fools and exchanged the glory of the immortal God for images made to look like a mortal human being and birds and animals and reptiles. (Rom. 1:20-23)
Science means knowledge, literally. But now it's fashionable to reject God as the first cause of the universe and life. Science as we know it came to be an inductive approach to investigating nature, not the a priori assumption of exclusively naturalistic causes, going all the way back to and including the Big Bang.

This controversy isn't between religion and science, it's between essential Christian theism and Darwinian naturalistic assumptions. If you don't make the first assumption of universal common descent there is a second assumption that automatically kicks in that you are therefore ignorant of science. It's called an equivocation fallacy, pretending two very different things are the same.

So the challenge remains, define science. But your not going to do that because you know that when you do God as first cause is perfectly compatible with science, just as Newton did.

Idols of the Theater are those which are due to sophistry and false learning. These idols are built up in the field of theology, philosophy, and science, and because they are defended by learned groups are accepted without question by the masses. When false philosophies have been cultivated and have attained a wide sphere of dominion in the world of the intellect they are no longer questioned. False superstructures are raised on false foundations, and in the end systems barren of merit parade their grandeur on the stage of the world. (Francis Bacon)
Francis Bacon at the dawn of the Scientific Revolution speaks of the idols of the mind, the fourth being the idol of the theater. Today that theater is Darwinism, I'm not ignorant of science as you suppose, I'm opposed to this Darwinian theater of the mind.
Have a nice day :)
Mark


No, you truly dont understand. Physical science only deal with physical reality. Metaphysics is never part of science and is therefore inadmissable in a science debate.

As for the rest you post, its just gibberish. You only have things against the ToE because of your religious conviction, not because of scientific findings. As dogma has no place in science its pointless to debate with you.
 
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mark kennedy

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In the world we can see that things are caused. But it is not possible for something to be the cause of itself, because this would entail that it exists prior to itself, which is a contradiction. If that by which it is caused is itself caused, then it too must have a cause. But this cannot be an infinitely long chain, so therefore there must be a cause which is not itself caused by anything further. This everyone understands to be God. (St. Thomas Aquinas)​

No, you truly dont understand. Physical science only deal with physical reality. Metaphysics is never part of science and is therefore inadmissable in a science debate.

As for the rest you post, its just gibberish. You only have things against the ToE because of your religious conviction, not because of scientific findings. As dogma has no place in science its pointless to debate with you.

Isaac Newton thought otherwise, which I showed you in no uncertain terms. It has a place in Principia but not in modern science. A term, I remind you, you have failed to define.

Rule 1: We are to admit no more causes of natural things than such as are both true and sufficient to explain their appearances. (Principia, Isaac Newton)
The cause being God is sufficient to explain the created order, there is nothing inherent in science that excludes God as the Primary Mover, aka First Cause. As far as Metaphysics have you never heard of String Theory, it's an attempt at a unified theory of physics, it is almost pure metaphysics. Metaphysics isn't necessarily miraculous, the point of it is to identify principles that transcend all reality.

Metaphysics: The branch of philosophy that deals with the first principles of things, including abstract concepts such as being, knowing, substance, cause, identity, time, and space. (Oxford Dictionaries)
Now you have misused yet another word. First it was science which you refused to define then to ignore the in depth discussion. Then you misused metaphysics which is a legitimate branch of philosophy, obviously useful in science since the quest for a unified theory was developed into String Theory. Now you want to mention TOE which isn't really a theory, evolution is a phenomenon. It's defined as the change of alleles (traits) in populations over time, not the a priori assumption of universal common descent by exclusively naturalistic means.

Darwinism, what you are equivocating with science and evolution is actually metaphysics. It's not as far reaching as String Theory but it's a unified theory of Biology.

Creation and evolution, between them, exhaust the possible explanations for the origin of living things. Organisms either appeared on the earth fully developed or they did not. If they did not, they must have developed from preexisting species by some process of modification. If they did appear in a fully developed state, they must indeed have been created by some omnipotent intelligence. (D.J. Futuyma, Science on Trial)
You have went straight to the ad hominem

Ad hominem (Latin for "to the man" or "to the person"), short for argumentum ad hominem, is a logical fallacy in which an argument is rebutted by attacking the character, motive, or other attribute of the person making the argument, or persons associated with the argument, rather than attacking the substance of the argument itself (Wikipedia)
These discussions always end up here, which is when, I know you have nothing left. What is distinctive about your posts is you never had anything else. You call that science, I call that fallacious.

Have a nice day :)
Mark
 
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VirOptimus

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In the world we can see that things are caused. But it is not possible for something to be the cause of itself, because this would entail that it exists prior to itself, which is a contradiction. If that by which it is caused is itself caused, then it too must have a cause. But this cannot be an infinitely long chain, so therefore there must be a cause which is not itself caused by anything further. This everyone understands to be God. (St. Thomas Aquinas)​



Isaac Newton thought otherwise, which I showed you in no uncertain terms. It has a place in Principia but not in modern science. A term, I remind you, you have failed to define.

Rule 1: We are to admit no more causes of natural things than such as are both true and sufficient to explain their appearances. (Principia, Isaac Newton)
The cause being God is sufficient to explain the created order, there is nothing inherent in science that excludes God as the Primary Mover, aka First Cause. As far as Metaphysics have you never heard of String Theory, it's an attempt at a unified theory of physics, it is almost pure metaphysics. Metaphysics isn't necessarily miraculous, the point of it is to identify principles that transcend all reality.

Metaphysics: The branch of philosophy that deals with the first principles of things, including abstract concepts such as being, knowing, substance, cause, identity, time, and space. (Oxford Dictionaries)
Now you have misused yet another word. First it was science which you refused to define then to ignore the in depth discussion. Then you misused metaphysics which is a legitimate branch of philosophy, obviously useful in science since the quest for a unified theory was developed into String Theory. Now you want to mention TOE which isn't really a theory, evolution is a phenomenon. It's defined as the change of alleles (traits) in populations over time, not the a priori assumption of universal common descent by exclusively naturalistic means.

Darwinism, what you are equivocating with science and evolution is actually metaphysics. It's not as far reaching as String Theory but it's a unified theory of Biology.

Creation and evolution, between them, exhaust the possible explanations for the origin of living things. Organisms either appeared on the earth fully developed or they did not. If they did not, they must have developed from preexisting species by some process of modification. If they did appear in a fully developed state, they must indeed have been created by some omnipotent intelligence. (D.J. Futuyma, Science on Trial)
You have went straight to the ad hominem

Ad hominem (Latin for "to the man" or "to the person"), short for argumentum ad hominem, is a logical fallacy in which an argument is rebutted by attacking the character, motive, or other attribute of the person making the argument, or persons associated with the argument, rather than attacking the substance of the argument itself (Wikipedia)
These discussions always end up here, which is when, I know you have nothing left. What is distinctive about your posts is you never had anything else. You call that science, I call that fallacious.

Have a nice day :)
Mark

I know what science is and I do know metaphysics and its place in philosophy.

You however do not.

The ToE is a scientific theory, arguing otherwise is rubbish. Common descent is inferred from the evidence.

You are arguing agianst physical reality, not a good place to be if you ask me.
 
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Loudmouth

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You are all over the road, the taxonomic philosophy you are appealing to has a long history and you could care less about the substantive foundation. It's sad really.

What is sad is that you can't explain why phylogenies are not evidence for evolution. It is also sad that you can't admit that phylogenies are objective, as shown by decades of peer reviewed papers.

I need nothing of the sort, you have one paper published before the human genome paper that proves nothing.

Here are several more references for you:

"The degree to which a given phylogeny displays a unique, well-supported, objective nested hierarchy can be rigorously quantified. Several different statistical tests have been developed for determining whether a phylogeny has a subjective or objective nested hierarchy, or whether a given nested hierarchy could have been generated by a chance process instead of a genealogical process (Swofford 1996, p. 504). These tests measure the degree of "cladistic hierarchical structure" (also known as the "phylogenetic signal") in a phylogeny, and phylogenies based upon true genealogical processes give high values of hierarchical structure, whereas subjective phylogenies that have only apparent hierarchical structure (like a phylogeny of cars, for example) give low values (Archie 1989; Faith and Cranston 1991; Farris 1989; Felsenstein 1985; Hillis 1991; Hillis and Huelsenbeck 1992; Huelsenbeck et al. 2001; Klassen et al. 1991)."
http://www.talkorigins.org/faqs/comdesc/section1.html#nested_hierarchy

All of those references demonstrate that evolution is predicted to produce a phylogeny, and that the detection of phylogenies is objective.

Again, you can't just ignore it.

No you didn't, you just echoed their naturalistic assumptions . . .

What assumptions?

You have:

We compared retroviral vectors derived from human immunodeficiency virus (HIV), avian sarcoma-leukosis virus (ASLV), and murine leukemia virus (MLV).
ERVs that have severely deleterious effects.

Please show me a single reference demonstrating that every single ERV insertion is deleterious. You complain about assumptions, yet here you are using an assumption.


Because they are not germ line invasions and they have devastating deleterious effects. That's why LM!

Yet another assumption you haven't supported.

That's a flat out fallacy, if it's an argument from similarity . . .

That is a lie. I am using phylogenies, not similarities. Please stop lying about my position.

Gross lack of substance...

You don't have an argument. How is the rarity of beneficial mutations a problem? Answer the question.

Identification of someone based on DNA and lineage are two very different things.

They are exactly the same. We are using DNA matches to establish past events.

You don't know the meaning of science, evolution or how the term homology is used in biology and you are trying to make a homology argument. That's the problem.

That is a lie. I am using a phylogenetic argument, not a homology argument. Please stop lying about my position.

No, you just don't have any.

"Given the size of vertebrate genomes (>1 × 10^9 bp) and the random nature of retroviral integration (22, 23), multiple integrations (and subsequent fixation) of ERV loci at precisely the same location are highly unlikely (24). Therefore, an ERV locus shared by two or more species is descended from a single integration event and is proof that the species share a common ancestor into whose germ line the original integration took place (14)."
http://www.pnas.org/content/96/18/10254.full

I have 200,000 pieces of evidence that you are still ignoring.

You don't get to draw a conclusion based on a false assumption.

You haven't pointed to a single assumption.

Only 29% are identical and on average each lineage requires a single amino acid substitution. Impossible given the deleterious nature of mutations and the enormity of change required.

Yet another assumption that you haven't backed with a shred of evidence.


Nonsense!!!!!



No it's not!!!



NO ITS NOT!!!! See how easy that is?

You yet again demonstrate that you are in full denial mode. You ignore the evidence and lie about my position.

You don't have an argument, I was being generous calling it a homology argument.

That is a lie. I am using a phylogenetic argument, not a homology argument. Please stop lying about my position.

Melted down quick on this one. It's so much fun watching it boil down to nothing so fast.

So you admit that you are just making it up? You have no references to back up your claims

Talk about melting down . . .


That's a strawman argument, we can talk about the effects of mutations when you finally start using source material and actually talking about mutations.

Why don't you hold yourself to this standard?
 
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Loudmouth

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No it's not about science and yes, I agree with that attitude it's pointless. Mainly because you didn't even try to make a point you just decided to insult me because of my religion.

It is pointless because you lie about the what a phylogenetic argument is.
 
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Loudmouth

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My arguments have very little to do with terminology, thematically it's a homology argument.

That is a lie. We are using a phylogenetic argument, not a homology argument. Please stop lying about our position.

The classification system termed phylogentic is really relating things by what they do and do not have in common.

Hold on. I thought you said it was a homology argument, yet here you are saying that they use differences. If they use the pattern of differences to evidence evolution, then it isn't a homology argument.
 
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Loudmouth

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I went back and reread this paper:

With more than 100 members, CERV 1/PTERV1 is one of the most abundant families of endogenous retroviruses in the chimpanzee genome. CERV 1/PTERV1 (Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses)
It's a highly detailed discussion of the 42 families of ERVs and being kind of a genetics buff it's interesting to glean again what I can from the paper. I rarely learn anything from the posters, sadly they are woefully ignorant of the large body of work they think they argue for and from. But I always learn something even if it is started from a tired old argument he never pursued beyond the surface.

I see that you still refuse to actually read the paper:

"Using the procedure described above, we identified a total of 425 full-length chimpanzee endogenous retroviruses. This is certainly an underestimate of the number of endogenous retroviruses in the chimpanzee genome because we consciously excluded any sequences that could not be unambiguously identified as an endogenous retrovirus."
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1779541/

They only looked at 425 of the 200,000 ERVs in the chimp genome. They even clearly state that these 425 are a subset of all the ERVs found in ape genomes.

You still refuse to admit this. Why?
 
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mark kennedy

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I see that you still refuse to actually read the paper:

"Using the procedure described above, we identified a total of 425 full-length chimpanzee endogenous retroviruses. This is certainly an underestimate of the number of endogenous retroviruses in the chimpanzee genome because we consciously excluded any sequences that could not be unambiguously identified as an endogenous retrovirus."
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1779541/

They only looked at 425 of the 200,000 ERVs in the chimp genome. They even clearly state that these 425 are a subset of all the ERVs found in ape genomes.

You still refuse to admit this. Why?

I've read it repeatedly, there isn't anything there except an assumption that they are the result of viral infections to the germline cells and that the only way the same mutations are in the same place in the respective genomes is common ancestry. To that I say nonsense. I've read half a dozen papers on ERVs and it was fun for a while but fielding the same worn out, fatally flawed argument ad infinitum is tiresome. Get some new material.

That is a lie. We are using a phylogenetic argument, not a homology argument. Please stop lying about our position.

A lie is when someone tells you something they know is not true in order to deceive you. A difference of opinion is when, given the same facts, someone else comes to a different conclusion. That does not make them liars, that makes your argument weak or otherwise unpersuasive. That does not mean the other person is dishonest, I understand what you saying I just think it's a lot of bunk. Once again, you are misusing words and twisting the meaning to you own ends.

Hold on. I thought you said it was a homology argument, yet here you are saying that they use differences. If they use the pattern of differences to evidence evolution, then it isn't a homology argument.

Well, for the sake of argument let's say your right:

Evolutionists claim that homologous structures, for example the wing of a bird and the forelimb of a reptile, evolved from an ancestral leg. If this is fact, then the genes for reptile legs and bird wings should also be homologous or similar. (Gish, 1979)
It has no bearing on adaptive evolution and the supposition that the mutations could only come from a common ancestor doesn't qualify:

Homology is the relationship between biological structures or sequences that are derived from a common ancestor. Homologous traits of organisms are therefore explained by descent from a common ancestor. (Biological Homology)
I think perhaps I have been entirely too generous with this pedantic, red herring, argument. Let's call it what it really is, a farce.

Have a nice day :)
Mark
 
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mark kennedy

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What is sad is that you can't explain why phylogenies are not evidence for evolution. It is also sad that you can't admit that phylogenies are objective, as shown by decades of peer reviewed papers.

It's a classification system, nothing more. So for the source material you are using to represent decades of scientific research you chose this.

Here are several more references for you:

"The degree to which a given phylogeny displays a unique, well-supported, objective nested hierarchy can be rigorously quantified. Several different statistical tests have been developed for determining whether a phylogeny has a subjective or objective nested hierarchy, or whether a given nested hierarchy could have been generated by a chance process instead of a genealogical process (Swofford 1996, p. 504). These tests measure the degree of "cladistic hierarchical structure" (also known as the "phylogenetic signal") in a phylogeny, and phylogenies based upon true genealogical processes give high values of hierarchical structure, whereas subjective phylogenies that have only apparent hierarchical structure (like a phylogeny of cars, for example) give low values (Archie 1989; Faith and Cranston 1991; Farris 1989; Felsenstein 1985; Hillis 1991; Hillis and Huelsenbeck 1992; Huelsenbeck et al. 2001; Klassen et al. 1991)."
http://www.talkorigins.org/faqs/comdesc/section1.html#nested_hierarchy

A lump of citations from the Talk Origins argument on, 'The Unique Universal Phylogenetic Tree'. Then you quote this indicating to qualify a phylogeny has to display a, well-supported, objective nested hierarchy can be rigorously quantified'. It all sounds well and good except the argument that follows isn't fragmentary ERVs, it's plants and trees. Included, later in the argument, is the classification of some very important fossils you never seem to want to talk about even though it's the subject of the thread:

(A) Pan troglodytes, chimpanzee, modern
(B) Australopithecus africanus, STS 5, 2.6 My
(C) Australopithecus africanus, STS 71, 2.5 My
(D) Homo habilis, KNM-ER 1813, 1.9 My
(E) Homo habilis, OH24, 1.8 My
(F) Homo rudolfensis, KNM-ER 1470, 1.8 My
(G) Homo erectus, Dmanisi cranium D2700, 1.75 My
(H) Homo ergaster (early H. erectus), KNM-ER 3733, 1.75 My
(I) Homo heidelbergensis, "Rhodesia man," 300,000 - 125,000 y
(J) Homo sapiens neanderthalensis, La Ferrassie 1, 70,000 y
(K) Homo sapiens neanderthalensis, La Chappelle-aux-Saints, 60,000 y
(L) Homo sapiens neanderthalensis, Le Moustier, 45,000 y
(M) Homo sapiens sapiens, Cro-Magnon I, 30,000 y
(N) Homo sapiens sapiens, modern (Example 3: Ape-Man)
I notice they did not see fit to include the cranial capacity. I'm still waiting for the part where you tell me what the phylogeny of cars and the chart of trees has to do with ERVs.

All of those references demonstrate that evolution is predicted to produce a phylogeny, and that the detection of phylogenies is objective.

Properly pursued and quantified it would be.

Again, you can't just ignore it.

Why not, you managed to ignore the OP throughout the thread.

What assumptions?

You have assumed universal common descent, the inundation of the human genome by high deleterious viral infections in the germline and the relevance of the source material you quote out of context. That's just to name a few.

Please show me a single reference demonstrating that every single ERV insertion is deleterious. You complain about assumptions, yet here you are using an assumption.

You don't have to, science is an inductive approach so you make inferences of the whole from a small subset of the whole. Germline invasions would be devastating, there is nothing to suggest otherwise. They are very rare and I have yet to see a single example of the being identified as infecting a human host. The only viral infections you have to demonstrate this is HIV which invades T cells with deadly deleterious results. When the virus makes it's way to the Lumph nodes the immune system is virtually destroyed. You mean to sit there and tell me that these deadly viral infections are responsible for producing 8% of the human genome. That defies all logic.

Yet another assumption you haven't supported.

That is a lie. I am using phylogenies, not similarities. Please stop lying about my position.

And the inevitable ad hominem fallacious rhetoric of course.

You don't have an argument. How is the rarity of beneficial mutations a problem? Answer the question.

Because you would need so many of that, which would have to be far out numbered by deleterious effects, all have multiplicative effects of fitness. That's why, then there is Haladen's Dilemma which is probably out of your reach anyway.

They are exactly the same. We are using DNA matches to establish past events.

Again with the we, in case you haven't noticed your audience is shrinking and I'm not impressed with the melodrama.

That is a lie. I am using a phylogenetic argument, not a homology argument. Please stop lying about my position.

No, actually it's fallacious rhetoric.

"Given the size of vertebrate genomes (>1 × 10^9 bp) and the random nature of retroviral integration (22, 23), multiple integrations (and subsequent fixation) of ERV loci at precisely the same location are highly unlikely (24). Therefore, an ERV locus shared by two or more species is descended from a single integration event and is proof that the species share a common ancestor into whose germ line the original integration took place (14)."
http://www.pnas.org/content/96/18/10254.full

I disagree, see how that works.

I have 200,000 pieces of evidence that you are still ignoring.

No you don't, you have a handful of mutations at specific loci. I remain unimpressed.

You haven't pointed to a single assumption.

Just not true, between the fallacies and presuppositions we seldom discuss anything else.

And I can dismiss the rest as a pedantic rant. Amazing, no matter how many times we do this it always spirals hopelessly and helplessly into biting personal remarks. That informs me that you have exhausted the material and you have nothing else.

Have a nice day :)
Mark
 
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