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Creationists: Explain your understanding of microevolution and macroevolution

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tas8831

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The allele the got duplicated must have appeared magically.
It did not get duplicated. You did not even read the abstract, did you?
My question was about the "information flow" in that system in which an insertion resulted only in overexpression of a gene which provided DDT resistance. You punted and engaged in dopey creationist goal-post moving.
And my engineering interests have always been in bioengineering. You should read my PhD thesis, I solved the inverse bioheat transfer equation.
Not interested.
That math is way, way, way out of your depth.
Probably so, but then, I am not arguing about that, am I? I am not presenting myself as an authority in that, am I?
I am not claiming to have shown how that is impossible by writing open access pay-to-play essays and patting myself on the back on discussion forums for having done so, am I?
And it was this interest that prompted me to study medicine. I have state licences in both engineering and medicine.
I doubt that. 1 year at a Caribbean medical school? LOL!
What kind of education is necessary to understand the physics and mathematics of biological evolution?
What kind of education is necessary to understand evolutionary biology?
You lack it, that is obvious. You seem to like pretending to knowledge that you do not possess.
Clearly, a degree in biology doesn't cut it. Otherwise, you would find the explanation in your so-called "on topic" journals.
Well, I sure won't find it in open access predatory hack ones, that is for sure.

I also won't see it in a guy that pretends to know all about all this yet defers on what should be a simple question for such a genius.
And I definitely will not see it in a guy that extrapolates a specific instance in a particular model organism to all evolutionary processes.

You might impress the fools at evolutionfairytale, but nobody else.
And what an attitude you have!
LOL!
 
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tas8831

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It's good to see that you are doing searches on me. It's those old discussions with macroevolutionists that helped me understand how microevolution actually works.
Apparently, they didn't help at all.
One of the many things I have learned over the years debating this subject is that macroevolutionists are very slow learners and not very good at mathematics.
And in my 25 years dealing with creationists pretending to understand things they don't is that they are primarily full of hot air who, regardless of their claimed pedigrees, when their bluff is called, pull the sort of ego-puffing garbage you are doing now.


kleinmanAlan KleinmanMD PhD Microbial Resistance

That is not what your PhD was in. So many creationists pull this, like when kinesiologist creationist Joe Mastropaolo called himself a 'rocket scientist' because he worked as a consultant on couch design for early spaceflights...​
 
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Alan Kleinman

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This open access paper? The 6+ year old one with only 2 citations - both by you? Groundbreaking stuff....
Peer reviewed? If it was, it was not reviewed by evolutionary biologists. I enjoy the naïve extrapolation:


Abstract: Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins

Five point mutations in a particular β-lactamase allele jointly increase bacterial resistance to a clinically important antibiotic by a factor of ∼100,000. In principle, evolution to this high-resistance β-lactamase might follow any of the 120 mutational trajectories linking these alleles. However, we demonstrate that 102 trajectories are inaccessible to Darwinian selection and that many of the remaining trajectories have negligible probabilities of realization, because four of these five mutations fail to increase drug resistance in some combinations. Pervasive biophysical pleiotropy within the β-lactamase seems to be responsible, and because such pleiotropy appears to be a general property of missense mutations, we conclude that much protein evolution will be similarly constrained. This implies that the protein tape of life may be largely reproducible and even predictable.


What this empirical example demonstrates is that the sequence of mutations must occur in an order of ever increasing fitness in order for the evolutionary process to have a reasonable chance of occurring...
So cute how you jump from one specific example to "the" evolutionary process, as if alleles or regulatory sequences that affect developmental trajectories behave in the same manner as the genes for antibiotic resistance in bacteria do.
So you think that DNA microevolutionary adaptation works differently in bacteria than any other replicator? Show us the math, you won't.

Also funny that you cite Haldane's 1957 paper - I'm assuming because you read about it in creationist essays? Warren Ewens found that Haldane's model was inapplicable, but I see you didn't site him. Typical.
I cited Haldane's paper because he was not modeling DNA microevolution, he is modeling competition. If you understand the physics of biological evolution, you know when Haldane's model is applicable. When I first started studying Haldane's work, I wondered if there was an exact solution and how it compared to Haldane's approximate solution. I wrote an exact solution and it turns out that Haldane's approximate solution is fairly accurate. But you wouldn't know because you have no idea what Haldane is doing. Actually, his model is quite simple and useful. I used a variation of his model when writing the mathematics for the Lenski experiment.

So, it looks to me like you really do not understand evolutionary biology, information theory (or you could have addressed my question about the p450 allele), AND now population genetics.
IOW, you fit right in with internet creationists.
So, where is the macroevolutionists' mathematical explanation of the Kishony and Lenski evolutionary experiments? If you want to see that mathematical explanation, you need to expand your reading list beyond your so-called "on topic" journals.

And don't worry about citations to my papers, there are ones you have missed and there will be more by authors that actually want to understand the evolution of drug resistance.
 
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tas8831

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Didn't the experts correct your errors at Peaceful Science regarding sequential and parallel?
I am not the person you need to convince. Why don't you try the experts?

You suppose wrong?

So, it looks to me like you really do not understand evolutionary biology, information theory (or you could have addressed my question about the p450 allele), AND now population genetics.
IOW, you fit right in with internet creationists.
You are confused, I never claimed to be a population geneticist.

Speaking of population genetics you never answered my question of why you bailed at Peaceful Science where the population geneticists offered you an opportunity to test your theories and you bailed. Why is that?[/QUOTE]
Dude - you replied to me, not Alan!
 
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Frank Robert

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You are confused, I never claimed to be a population geneticist.

Speaking of population genetics you never answered my question of why you bailed at Peaceful Science where the population geneticists offered you an opportunity to test your theories and you bailed. Why is that?
Dude - you replied to me, not Alan![/QUOTE]
I am apologize, I was confused. I thought I was responding to Alan. I'll delete the post.
 
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Alan Kleinman

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Apparently, they didn't help at all.
Sure it did! It helped me understand the physics of biological evolution and formulate the correct mathematics.
And in my 25 years dealing with creationists pretending to understand things they don't is that they are primarily full of hot air who, regardless of their claimed pedigrees, when their bluff is called, pull the sort of ego-puffing garbage you are doing now.
I have all (and that means all) the experimental and empirical evidence supporting my argument. Of course, you could prove me wrong by posting a single empirical claim that contradicts this math. The multiplication rule always comes into play when you have any adaptive evolutionary process with more than a single adaptive mutation. You won't present an example that contradicts this. Maybe in another 25 years, you will learn something about DNA microevolution.
 
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tas8831

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So you think that DNA microevolutionary adaptation works differently in bacteria than any other replicator? Show us the math, you won't.

You have horrible reading comprehension and look like a sad 1-trick pony. So you think bacterial antibacterial resistance is just like evolutionary changes that result in morphological differences? Go back to the fairy tale forum.
I cited Haldane's paper because he was not modeling DNA microevolution, he is modeling competition. If you understand the physics of biological evolution, you know when Haldane's model is applicable.
I know it basically isn't. You don't.
When I first started studying [sic] Haldane's work, I wondered if there was an exact solution and how it compared to Haldane's approximate solution. I wrote an exact solution and it turns out that Haldane's approximate solution is fairly accurate. But you wouldn't know because you have no idea what Haldane is doing. Actually, his model is quite simple and useful. I used a variation of his model when writing the mathematics for the Lenski experiment.
Looks like an engineer's approach to biology didn't serve you so well.

Here is Ewens, in an interview in 2004:


A second form of the load concept was introduced by the British biologist-mathematician Haldane who claimed, in 1957, that substitutions in a Darwinian evolutionary process could not proceed at more than a certain comparatively slow rate, because if they were to proceed at a faster rate, there would be an excessive “substitutional load.” Since Haldane was so famous, that concept attracted a lot of attention. In particular, Crow and Kimura made various substitutional load calculations around 1960, that is at about that time that I was becoming interested in genetics.
Perhaps the only disagreement I ever had with Crow concerned the substitutional load, because I never thought that the calculations concerning this load, which he and others carried out, were appropriate. From the very start, my own calculations suggested to me that Haldane’s arguments were misguided and indeed erroneous, and that there is no practical upper limit to the rate at which substitutions can occur under Darwinian natural selection.

And further:


AP: Can I follow that up? Can you, in layman’s terms, explain why you think that there is no upper limit in the way that Haldane suggested?


WE: I can, but it becomes rather mathematical. Let me approach it this way. Suppose that you consider one gene locus only, at which a superior allele is replacing an inferior allele through natural selection. In broad terms, what this requires is that individuals carrying the superior allele have on average somewhat more offspring than the mean number of offspring per parent, otherwise the frequency of the superior allele would not increase. This introduces a concept of a “one-locus substitutional load,” and a formal numerical value for this load is fairly easily calculated. However, the crux of the problem arises when one considers the many, perhaps hundreds or even thousands, substitution processes that are being carried out at any one time. In his mathematical treatment of this “multi-locus” situation, Kimura, for example, in effect simply multiplied the loads at the various individual substituting loci to arrive at an overall total load. The load so calculated was enormous. This uses a reductionist approach to the load question, and to me, this reductionist approach is not the right way of doing things. Further, the multiplicative assumption is, to me, unjustified. It is the selectively favored individuals, carrying a variety of different genes at different loci, who are reproducing and being required to contribute more offspring than the average. If you consider load arguments from that individual-based, non-reductionist basis, the mathematical edifice which Kimura built up just evaporates, and in my view the very severe load calculations which he obtained by his approach became irrelevant and misleading. The individual-based calculations that I made indicated to me that there is no unbearable substitutional load.


So, where is the macroevolutionists' mathematical explanation of the Kishony and Lenski evolutionary experiments? If you want to see that mathematical explanation, you need to expand your reading list beyond your so-called "on topic" journals.
Math is nice, but when the models fail, I look at the actual evidence.
One-trick ponies eventually need to be put out to pasture.
And don't worry about citations to my papers, there are ones you have missed and there will be more by authors that actually want to understand the evolution of drug resistance.
Right - you're the expert at math and drug resistance - so, in your amazingly un-read yet somehow groundbreaking papers, did you first ask where the bacterial genes undergoing selection came from in the first place?

Or do you just do that when you have no clue despite claiming expertise?

What is the probability that an ACCORD transposon inserted into the p450 allele in drosophila that provided them with DDT resistance?

Show your mathemagic.

2002 Sep 27;297(5590):2253-6.
doi: 10.1126/science.1074170.
A single p450 allele associated with insecticide resistance in Drosophila
Abstract
Insecticide resistance is one of the most widespread genetic changes caused by human activity, but we still understand little about the origins and spread of resistant alleles in global populations of insects. Here, via microarray analysis of all P450s in Drosophila melanogaster, we show that DDT-R, a gene conferring resistance to DDT, is associated with over-transcription of a single cytochrome P450 gene, Cyp6g1. Transgenic analysis of Cyp6g1 shows that over-transcription of this gene alone is both necessary and sufficient for resistance. Resistance and up-regulation in Drosophila populations are associated with a single Cyp6g1 allele that has spread globally. This allele is characterized by the insertion of an Accord transposable element into the 5' end of the Cyp6g1 gene.

 
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Alan Kleinman

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Didn't the experts correct your errors at Peaceful Science regarding sequential and parallel?
They never presented empirical evidence of their claims. You can have different lineages evolving to the same selection conditions on different evolutionary trajectories but each of these trajectories work according to the math that I've presented.
Speaking of population genetics you never answered my question of why you bailed at Peaceful Science where the population geneticists offered you an opportunity to test your theories and you bailed. Why is that?
I made my point to Swamidass that he shouldn't be claiming that humans and chimpanzees are related based on the concept of neutral evolution. Swamidass was never willing to discuss my papers or the Kishony or Lenski experiments, just like the macroevolutionists on this forum. In fact, it irritates macroevolutionists to discuss these experiments. I understand mathematics is not your strong point.
 
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tas8831

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You are not going to get reptiles evolving into birds and fish evolving into mammals by microevolution. The multiplication rule of probabilities requires far too large populations for this kind of genetic transformation.

Now I know why you ignore questions like the p450 one.

You have no clue. You DO think that there is some kind of 1-to-1 relationship between individual mutations and particular phenotypic outcomes, don't you?
Despite your obvious pretentiousness, you have a middle-schoolers grasp of how evolution would even work.

How about this - as you are the greatest expert on physics and math wrt evolution... DO THE MATH.

Show us all, exactly, WHY we are not going to get reptiles evolving into birds and fish evolving into mammals by microevolution.
EXPLAIN, with real data (not navel gazing and hypotheticals) why the multiplication rule of probabilities requires "far too large populations" for this kind of genetic transformation, and make sure that you explain exactly what you mean by "transformation". How many mutations are required and why is that too many? You seem to think you know.

While doing this - and I am so sure the world's greatest math and physics and medicine genius can easily do this - provide empirical examples (or even just 1) of the determination of the number of mutations that would have been required for such transitions (and how you know) in order for things to happen without the improbable exitance and intervention of your favorite deity.
Explain how an optimized micro-evolved protein would have been/is necessary for such a transition and how this was determined.

I can't wait!
 
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Alan Kleinman

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Looks like an engineer's approach to biology didn't serve you so well.

Here is Ewens, in an interview in 2004:


A second form of the load concept was introduced by the British biologist-mathematician Haldane who claimed, in 1957, that substitutions in a Darwinian evolutionary process could not proceed at more than a certain comparatively slow rate, because if they were to proceed at a faster rate, there would be an excessive “substitutional load.” Since Haldane was so famous, that concept attracted a lot of attention. In particular, Crow and Kimura made various substitutional load calculations around 1960, that is at about that time that I was becoming interested in genetics.
Perhaps the only disagreement I ever had with Crow concerned the substitutional load, because I never thought that the calculations concerning this load, which he and others carried out, were appropriate. From the very start, my own calculations suggested to me that Haldane’s arguments were misguided and indeed erroneous, and that there is no practical upper limit to the rate at which substitutions can occur under Darwinian natural selection.
Haldane's estimates for time to fixation correspond to what Lenski measured in his experiment. Why don't you present experimental evidence that contradicts Haldane's estimates? You won't.
What is the probability that an ACCORD transposon inserted into the p450 allele in drosophila that provided them with DDT resistance?
You mean insects can evolve resistance to insecticides? You better use combination insecticides, that forces the insect to evolve to two or more selection pressures simultaneously and the multiplication rule makes this a much lower probability microevolutionary process.
 
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Phred

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The allele the got duplicated must have appeared magically. And my engineering interests have always been in bioengineering. You should read my PhD thesis, I solved the inverse bioheat transfer equation. That math is way, way, way out of your depth. And it was this interest that prompted me to study medicine. I have state licences in both engineering and medicine. What kind of education is necessary to understand the physics and mathematics of biological evolution? Clearly, a degree in biology doesn't cut it. Otherwise, you would find the explanation in your so-called "on topic" journals.
And will all that genius leaking out of you... you chose to go to DeVry medical school of the Caribbean.

Something doesn't match up here. Maybe you could explain this all to me...
 
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tas8831

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I made my point to Swamidass that he shouldn't be claiming that humans and chimpanzees are related based on the concept of neutral evolution.
He didn't. He was correcting your ignorance of the subject.
Swamidass was never willing to discuss my papers or the Kishony or Lenski experiments, just like the macroevolutionists on this forum.

Funny, I just quoted one of your jokes, I mean, papers, and explained why it was nonsense.
I understand mathematics is not your strong point.
Whatever, creationist.
Funny how you people can never be bothered to test your own claims.
Ever.
 
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tas8831

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No, I haven't. Use combination insecticides to inhibit the microevolution of resistant variants.
You are clueless, just like I thought.
You desperately want to present yourself as this expert, and you cannot even address simple questions on things you have not spent years dreaming up retorts to.

Pathetic.

2 whole citations in 6 years - super genius!!!
 
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Alan Kleinman

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And will all that genius leaking out of you... you chose to go to DeVry medical school of the Caribbean.
Got a good education there, no problem passing my licensing examinations. Do they make clowns get state licenses? Naw, anyone can be a macroevolutionist, all it takes is mathematical incompetence, you got that nailed down.
 
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Alan Kleinman

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He didn't. He was correcting your ignorance of the subject.
Oh really? Swamidass is a physician and a PhD, why don't you ask him to explain how drug resistance evolves? Instead, he makes very sloppy claims about neutral evolution.
 
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tas8831

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Wow - almost like a trend or something. I should have stuck to my original plan and not wasted time on this creationist.

@kleinman, I’d like to take a brief pause from the debate here and ask what you are hoping to accomplish with your participation here. It’s clear that you aren’t hoping to learn anything since you already have all the answers. It is also quite unlikely that you have secret knowledge to impart that is unavailable to the PhD researchers and graduate students that regularly contribute here. Perhaps you just like to argue. Or perhaps there is some other reason I haven’t yet considered.
Let me! Let me! An egomaniac trying to find a way to prop up his ancient middle eastern beliefs?
 
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