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The Fossil Record- As God Would Have Made It Through Time

tas8831

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I said certain vocal reactions, not speech.
vo·cal
[ˈvōk(ə)l]
ADJECTIVE

1. relating to the human voice.
"nonlinguistic vocal effects like laughs and sobs"
synonyms: vocalized · voiced · spoken · said · uttered · expressed · articulated · [more]

Vocal reactions are speech - speech is the 'vocal reaction.'

Speech is generated in the brain, not the gut as you wrote.

Remember?

It was hilarious!

"How do you think unconscious vocal signals get to the brain so fast when a person, or a giraffe, is suddenly surprised or frightened?
Or that the throat tightens and the voice becomes weak under certain stressful situations. This is a visceral reaction (the 'mind' of the body) influencing the function of the throat and voice box without the direction of the brain."

Funny stuff!
 
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tas8831

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How have man and animals evolved, since Genesis 1?
Question begging fallacy - you assume and speculate that Genesis 1 was a real event.

Please provide evidence that this is so.

Oh - and you also accidentally left off your amazing responses to all this in your post:

Do grace us all with your 135 IQ take on the 'starting premise' for evolution such that it is flawed - just make sure you do not claim that the starting premise for evolution is abiogenesis. Because that is wrong, and to claim otherwise would be an admission of ignorance (or deception?).

And then you can perhaps explain all the assumption and speculation outlined here:

I forget now who originally posted these on this forum, but I keep it in my archives because it offers a nice 'linear' progression of testing a methodology and then applying it:

The tested methodology:

Science 25 October 1991:
Vol. 254. no. 5031, pp. 554 - 558

Gene trees and the origins of inbred strains of mice

WR Atchley and WM Fitch

Extensive data on genetic divergence among 24 inbred strains of mice provide an opportunity to examine the concordance of gene trees and species trees, especially whether structured subsamples of loci give congruent estimates of phylogenetic relationships. Phylogenetic analyses of 144 separate loci reproduce almost exactly the known genealogical relationships among these 24 strains. Partitioning these loci into structured subsets representing loci coding for proteins, the immune system and endogenous viruses give incongruent phylogenetic results. The gene tree based on protein loci provides an accurate picture of the genealogical relationships among strains; however, gene trees based upon immune and viral data show significant deviations from known genealogical affinities.

======================

Science, Vol 255, Issue 5044, 589-592

Experimental phylogenetics: generation of a known phylogeny

DM Hillis, JJ Bull, ME White, MR Badgett, and IJ Molineux
Department of Zoology, University of Texas, Austin 78712.

Although methods of phylogenetic estimation are used routinely in comparative biology, direct tests of these methods are hampered by the lack of known phylogenies. Here a system based on serial propagation of bacteriophage T7 in the presence of a mutagen was used to create the first completely known phylogeny. Restriction-site maps of the terminal lineages were used to infer the evolutionary history of the experimental lines for comparison to the known history and actual ancestors. The five methods used to reconstruct branching pattern all predicted the correct topology but varied in their predictions of branch lengths; one method also predicts ancestral restriction maps and was found to be greater than 98 percent accurate.

==================================

Science, Vol 264, Issue 5159, 671-677

Application and accuracy of molecular phylogenies

DM Hillis, JP Huelsenbeck, and CW Cunningham
Department of Zoology, University of Texas, Austin 78712.

Molecular investigations of evolutionary history are being used to study subjects as diverse as the epidemiology of acquired immune deficiency syndrome and the origin of life. These studies depend on accurate estimates of phylogeny. The performance of methods of phylogenetic analysis can be assessed by numerical simulation studies and by the experimental evolution of organisms in controlled laboratory situations. Both kinds of assessment indicate that existing methods are effective at estimating phylogenies over a wide range of evolutionary conditions, especially if information about substitution bias is used to provide differential weightings for character transformations.



We can ASSUME that the results of an application of those methods have merit.


Application of the tested methodology:

Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: Enlarging genus Homo

"Here we compare ≈90 kb of coding DNA nucleotide sequence from 97 human genes to their sequenced chimpanzee counterparts and to available sequenced gorilla, orangutan, and Old World monkey counterparts, and, on a more limited basis, to mouse. The nonsynonymous changes (functionally important), like synonymous changes (functionally much less important), show chimpanzees and humans to be most closely related, sharing 99.4% identity at nonsynonymous sites and 98.4% at synonymous sites. "



Mitochondrial Insertions into Primate Nuclear Genomes Suggest the Use of numts as a Tool for Phylogeny

"Moreover, numts identified in gorilla Supercontigs were used to test the human–chimp–gorilla trichotomy, yielding a high level of support for the sister relationship of human and chimpanzee."



A Molecular Phylogeny of Living Primates

"Once contentiously debated, the closest human relative of chimpanzee (Pan) within subfamily Homininae (Gorilla, Pan, Homo) is now generally undisputed. The branch forming the Homo andPanlineage apart from Gorilla is relatively short (node 73, 27 steps MP, 0 indels) compared with that of thePan genus (node 72, 91 steps MP, 2 indels) and suggests rapid speciation into the 3 genera occurred early in Homininae evolution. Based on 54 gene regions, Homo-Pan genetic distance range from 6.92 to 7.90×10−3 substitutions/site (P. paniscus and P. troglodytes, respectively), which is less than previous estimates based on large scale sequencing of specific regions such as chromosome 7[50]. "




Catarrhine phylogeny: noncoding DNA evidence for a diphyletic origin of the mangabeys and for a human-chimpanzee clade.

"The Superfamily Hominoidea for apes and humans is reduced to family Hominidae within Superfamily Cercopithecoidea, with all living hominids placed in subfamily Homininae; and (4) chimpanzees and humans are members of a single genus, Homo, with common and bonobo chimpanzees placed in subgenus H. (Pan) and humans placed in subgenus H. (Homo). It may be noted that humans and chimpanzees are more than 98.3% identical in their typical nuclear noncoding DNA and probably more than 99.5% identical in the active coding nucleotide sequences of their functional nuclear genes (Goodman et al., 1989, 1990). In mammals such high genetic correspondence is commonly found between sibling species below the generic level but not between species in different genera."
 
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tas8831

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You are becoming a regular pshun2404. How long before I catch YOU plagiarizing and doctoring quotes and misrepresenting articles?
Tell me more about the mice as we are 60 percent mouse.

Nice diversion.

Pathetic and predictable, but nice. It shows that you cannot handle the evidence as a whole, and that you will engage in your usual escape-antics.

Mice and humans were not compared in any of the articles.

So, are you being deceptive? Or just desperately seeking diversion because you cannot address the evidence?

Do we have a mouse in our ancestry?

Yes. But this has ZERO to do with the Atchley and Fitch paper. But you just want people to think that you have some special insights.

Which you don't.
You do not even understand the relevance of that paper.

The relevance is that DNA sequence analysis methods were tested on KNOWN mouse relationships and shown to be accurate.
And if 97 percent of our DNA is nonfunctional how much chimp DNA is nonfunctional.

Whats this? A blatant attempt at diversion??

The only place in any of those abstracts that he number 97 comes up is here:

""Here we compare ≈90 kb of coding DNA nucleotide sequence from 97 human genes to their sequenced chimpanzee counterparts and to available sequenced gorilla, orangutan..."

Where did anyone say anything about 97% non-functional? Another diversion tactic?

Are you scared of the evidence?

If the same than the functional similarities must be found in the remaining 3 percent, correct? Or is the equation loaded with the 97 percent nonfunctional DNA?

You have no idea what you are talking about.

Humans, Chimps Not as Closely Related as Thought?

"In contrast, the DNA of humans and mice is only around 60 percent similar."


Mice and humans were not compared in any of the articles referenced.

Your sad diversions only make you look scared and desperate.

You are flailing. And scared. And perhaps a bit dishonest maybe?

Regardless, you have no business even discussing evolution. Sad.

How about, instead of picking a single tidbit in a larger post and nitpicking as a means of protecting your religion via keyword searches that you actually address the entire post? You do this with everyone all the time.

Do grace us all with your 135 IQ take on the 'starting premise' for evolution such that it is flawed - just make sure you do not claim that the starting premise for evolution is abiogenesis. Because that is wrong, and to claim otherwise would be an admission of ignorance (or deception?).

And then you can perhaps explain all the assumption and speculation outlined here:

I forget now who originally posted these on this forum, but I keep it in my archives because it offers a nice 'linear' progression of testing a methodology and then applying it:

The tested methodology:

Science 25 October 1991:
Vol. 254. no. 5031, pp. 554 - 558

Gene trees and the origins of inbred strains of mice

WR Atchley and WM Fitch

Extensive data on genetic divergence among 24 inbred strains of mice provide an opportunity to examine the concordance of gene trees and species trees, especially whether structured subsamples of loci give congruent estimates of phylogenetic relationships. Phylogenetic analyses of 144 separate loci reproduce almost exactly the known genealogical relationships among these 24 strains. Partitioning these loci into structured subsets representing loci coding for proteins, the immune system and endogenous viruses give incongruent phylogenetic results. The gene tree based on protein loci provides an accurate picture of the genealogical relationships among strains; however, gene trees based upon immune and viral data show significant deviations from known genealogical affinities.

======================

Science, Vol 255, Issue 5044, 589-592

Experimental phylogenetics: generation of a known phylogeny

DM Hillis, JJ Bull, ME White, MR Badgett, and IJ Molineux
Department of Zoology, University of Texas, Austin 78712.

Although methods of phylogenetic estimation are used routinely in comparative biology, direct tests of these methods are hampered by the lack of known phylogenies. Here a system based on serial propagation of bacteriophage T7 in the presence of a mutagen was used to create the first completely known phylogeny. Restriction-site maps of the terminal lineages were used to infer the evolutionary history of the experimental lines for comparison to the known history and actual ancestors. The five methods used to reconstruct branching pattern all predicted the correct topology but varied in their predictions of branch lengths; one method also predicts ancestral restriction maps and was found to be greater than 98 percent accurate.

==================================

Science, Vol 264, Issue 5159, 671-677

Application and accuracy of molecular phylogenies

DM Hillis, JP Huelsenbeck, and CW Cunningham
Department of Zoology, University of Texas, Austin 78712.

Molecular investigations of evolutionary history are being used to study subjects as diverse as the epidemiology of acquired immune deficiency syndrome and the origin of life. These studies depend on accurate estimates of phylogeny. The performance of methods of phylogenetic analysis can be assessed by numerical simulation studies and by the experimental evolution of organisms in controlled laboratory situations. Both kinds of assessment indicate that existing methods are effective at estimating phylogenies over a wide range of evolutionary conditions, especially if information about substitution bias is used to provide differential weightings for character transformations.



We can ASSUME that the results of an application of those methods have merit.


Application of the tested methodology:

Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: Enlarging genus Homo

"Here we compare ≈90 kb of coding DNA nucleotide sequence from 97 human genes to their sequenced chimpanzee counterparts and to available sequenced gorilla, orangutan, and Old World monkey counterparts, and, on a more limited basis, to mouse. The nonsynonymous changes (functionally important), like synonymous changes (functionally much less important), show chimpanzees and humans to be most closely related, sharing 99.4% identity at nonsynonymous sites and 98.4% at synonymous sites. "



Mitochondrial Insertions into Primate Nuclear Genomes Suggest the Use of numts as a Tool for Phylogeny

"Moreover, numts identified in gorilla Supercontigs were used to test the human–chimp–gorilla trichotomy, yielding a high level of support for the sister relationship of human and chimpanzee."



A Molecular Phylogeny of Living Primates

"Once contentiously debated, the closest human relative of chimpanzee (Pan) within subfamily Homininae (Gorilla, Pan, Homo) is now generally undisputed. The branch forming the Homo andPanlineage apart from Gorilla is relatively short (node 73, 27 steps MP, 0 indels) compared with that of thePan genus (node 72, 91 steps MP, 2 indels) and suggests rapid speciation into the 3 genera occurred early in Homininae evolution. Based on 54 gene regions, Homo-Pan genetic distance range from 6.92 to 7.90×10−3 substitutions/site (P. paniscus and P. troglodytes, respectively), which is less than previous estimates based on large scale sequencing of specific regions such as chromosome 7[50]. "




Catarrhine phylogeny: noncoding DNA evidence for a diphyletic origin of the mangabeys and for a human-chimpanzee clade.

"The Superfamily Hominoidea for apes and humans is reduced to family Hominidae within Superfamily Cercopithecoidea, with all living hominids placed in subfamily Homininae; and (4) chimpanzees and humans are members of a single genus, Homo, with common and bonobo chimpanzees placed in subgenus H. (Pan) and humans placed in subgenus H. (Homo). It may be noted that humans and chimpanzees are more than 98.3% identical in their typical nuclear noncoding DNA and probably more than 99.5% identical in the active coding nucleotide sequences of their functional nuclear genes (Goodman et al., 1989, 1990). In mammals such high genetic correspondence is commonly found between sibling species below the generic level but not between species in different genera."
 
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Jimmy D

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Are you suggesting that the passenger pigeon was unfit for survival?

Say what!?!?

Was the Passenger pigeon around in Gen 1?

I was responding to your question asking about "How have man and animals evolved, since Genesis 1?"

I was under the impression that you dudes claimed that just the original "kinds" were around in those times?

You know, the explanation for millions of species fitting on the ark, and this talk of "kinds" with super-genomes giving birth to many different sub species, etc

Edit: Sorry forgot to ask, when was "Genesis 1" anyway?

We need to know these things if you want an answer to you question.
 
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tas8831

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Say what!?!?

Was the Passenger pigeon around in Gen 1?

I was responding to your question asking about "How have man and animals evolved, since Genesis 1?"

I was under the impression that you dudes claimed that just the original "kinds" were around in those times?

You know, the explanation for millions of species fitting on the ark, and this talk of "kinds" with super-genomes giving birth to many different sub species, etc

Well... He claims that motor impulses for vocalizations come from the aortic arch via the RLN, so...
 
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theQuincunx5

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I really don't know, but our prisons are full of innocent people put there by experts who carefully examined the evidence but came to the wrong conclusion.

OK. So learning anything is clearly a waste of time because somewhere someone did something incorrectly.

But actually as per prisons and the "war on drugs" which have increased our prison population, well that's not really because of any "expertise"...but rather good ol' Conservative "Lock 'em up" justice fantasies.

Actually, expertise and studies show a very different approach is called for. But the non-expert "Law 'n' Order" folks like Jeff Sessions would rather not do that because it would result in fewer people being PUNISHED.
 
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tas8831

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But actually as per prisons and the "war on drugs" which have increased our prison population, well that's not really because of any "expertise"...but rather good ol' Conservative "Lock 'em up" justice fantasies.

Which is odd since those same 'LOCK 'EM UP!' folks seem to want to look the other way and find excuses when their pals or heroes are looking at jail time...
 
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bhsmte

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I really don't know, but our prisons are full of innocent people put there by experts who carefully examined the evidence but came to the wrong conclusion.

Our prisons are "full" of innocent people? What percentage of the prison population, would you say are innocent?
 
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theQuincunx5

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Our prisons are "full" of innocent people? What percentage of the prison population, would you say are innocent?

In reality our prisons are full of people who shouldn't be there owing to the minimal nature of their crimes. We have among the highest incarceration rates of the developed world which is largely due to a confluence of stupid American "hardcore unyielding justice" and a "for-profit prison system".

The War on Drugs blew up the prison population and, viola, a larger number of drug offenders locked up were minorities! Even though the same drug offenses when committed by good white kids only get a slap on the wrist. Isn't it strange how things work out like that? But it really works out for America because we really just wanted to lock up the minorities anyway. Who would have thought it would work out so perfectly?

Studies and even examples from other countries show a better way. They are closing some prisons in the Netherlands because they aren't filling them up like we are in the US. Maybe the Dutch don't dislike their minorities enough. Oh, wait, I did see a Zwarte Piet in a store window a few years back when I was there over the holiday season....
 
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OldWiseGuy

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Where did anyone say anything about 97% non-functional? Another diversion tactic?

It's from my link.

"Scientists estimate that up to 97 percent of DNA in the human genome has no known function."
 
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OldWiseGuy

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vo·cal
[ˈvōk(ə)l]
ADJECTIVE

1. relating to the human voice.
"nonlinguistic vocal effects like laughs and sobs"
synonyms: vocalized · voiced · spoken · said · uttered · expressed · articulated · [more]

Vocal reactions are speech - speech is the 'vocal reaction.'

Speech is generated in the brain, not the gut as you wrote.

Speech is deliberate communication using specific phonetically formed sounds. Vocalization is any sound coming from the vocal chords. Big difference.
 
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OldWiseGuy

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Our prisons are "full" of innocent people? What percentage of the prison population, would you say are innocent?

I'll rephrase it. Our prisons have many......
 
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PsychoSarah

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"Life-like" isn't life. And they must get their own 'dirt'. No fair using existing stuff.
1. you are moving the goalposts. You never asked for life that wasn't genetically similar to living organisms in any regard. Which, by the way, would be a pointless request, seeing how making the genome using ones known to work versus ones not known to work makes absolutely no difference.
2. do we not build cars from "existing stuff"? We can't create matter, dude, your contention about us using the nucleotide bases present in normal living organisms doesn't make any sense. It has 2 more that normal life doesn't, and that persists upon division.
3. I have no idea why you are calling this artificial organism "life-like" as if it doesn't reproduce, metabolize, etc. The only use of the word in the link I sent you was a short quote from one of the authors of the study, which goes like this: "We've made this semisynthetic organism more life-like," said Romesberg, senior author of the new study.

It is taken completely out of context, and isn't even a complete sentence. It could end off with "... than any other artificial life form", which would give no indication as to what extent it is like existing life.

Not only that, but your complaint that "life-like isn't life" contradicts your demand for them to "get their own dirt". Any artificial organism made that doesn't use the base pairs we associate with living organisms is "only going to be life-like, not true life", and anything that does use those base pairs will make you say "no fair using existing stuff". By the way, how are people supposed to use stuff that DOESN'T exist?
 
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tas8831

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It's from my link.

"Scientists estimate that up to 97 percent of DNA in the human genome has no known function."
Oh, right - "up to." No "known" function. From an article in National Geographic News. From 2002.

Anyway, not sure why you felt the need to track down something superfluous like that when it has ZERO to do with anything I posted to you. Actually, I do know - it is a common creationist tactic when you guys realize you've got nothing of merit to fall back on. Pity that you can't respond substantively or admit how naive your beliefs about how the body works are.

And before I forget -

" If the larynx needs a signal from the aortic arch that loop is a great way to facilitate the 'my heart was in my throat' response."


Please provide evidence that "the aortic arch" sends motor input to the larynx. Via the RLN.
 
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tas8831

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Speech is deliberate communication using specific phonetically formed sounds. Vocalization is any sound coming from the vocal chords. Big difference.
You can keep writing "big difference" all you want, hero.

But it doesn't change the fact that you keep ignoring and try to paper over your errors with irrelevant misdirection.

If you want to equate a 'vocalization' such as the one I mentioned when I got sucker punched in the stomach with your laughable fantasy about these things 'coming from the gut', so be it. It just adds weight to my position that you are in over your head, too arrogant to admit it, and desperately trying to cover it all up.


" This is a visceral reaction (the 'mind' of the body) influencing the function of the throat and voice box without the direction of the brain."


" If the larynx needs a signal from the aortic arch that loop is a great way to facilitate the 'my heart was in my throat' response."


Please provide evidence that "the aortic arch" sends motor input to the larynx. Via the RLN.
 
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tas8831

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Evolutionists insult creationists much more often.
Perhaps if creationists didn't:

Plagiarize
Embellish
Dismiss evidence
Ignore evidence
condescend
fall back on bible lore when they've got nothing relevant to write
Re-post the same rebutted/refuted arguments over and over
Pretend to know things they do not
Claim to possess knowledge that they clearly do not
etc.

so frequently, the insults may not be produced out of frustration?

Maybe creationists could embody and display some of that apparently mythical Christian humility that we hear about so often?

Just a thought...
 
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Jjmcubbin

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Oh, right - "up to." No "known" function. From an article in National Geographic News. From 2002.

Anyway, not sure why you felt the need to track down something superfluous like that when it has ZERO to do with anything I posted to you. Actually, I do know - it is a common creationist tactic when you guys realize you've got nothing of merit to fall back on. Pity that you can't respond substantively or admit how naive your beliefs about how the body works are.

And before I forget -

" If the larynx needs a signal from the aortic arch that loop is a great way to facilitate the 'my heart was in my throat' response."
EDIT: Grammar

Please provide evidence that "the aortic arch" sends motor input to the larynx. Via the RLN.
Someone said that the larynx sends signals form the systemic aorta? I'd laugh if the person saying that crap was a child, but if its an adult, that's just sad.
 
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tas8831

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Someone said that the larynx sends signals form the systemic aorta? I'd laugh if the person saying that crap was a child, but if its an adult, that's just sad.
Oh yeah... And this was all part of an attempt to 'justify' the circuitous routing of the recurrent laryngeal nerve - which is amazing DESIGN, of course. Somehow, this wizard thought that certain "vocalizations" are produced from impulses from the gut, and that the RLN carried these impulses, therefore Jesus. Or something. Most likely it is all just a big diversion to distract themselves from the fact that they cannot produce any scientific rationale for believing what they do.
 
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tas8831

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Speech is deliberate communication using specific phonetically formed sounds. Vocalization is any sound coming from the vocal chords. Big difference.

Great.

But no speech or vocalization or vocal sounds are generated in the gut, or the 'aortic arch', or anywhere but the brain, and there are no 'reflexive' vocalizations that are produced via such gut-originated signals. Because there is no such thing.

And even if the gut could somehow produce motor impulses relevant to speech, they would not go directly to the larynx via the recurrent laryngeal nerve.


Again - why is it so hard for creationists to admit they are wrong about something?

Also:

"If the larynx needs a signal from the aortic arch that loop is a great way to facilitate the 'my heart was in my throat' response."


Please provide evidence that "the aortic arch" sends motor input to the larynx. Via the RLN.
 
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