sfs
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- Jun 30, 2003
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Look, the whole point of this thread (at least as I've been able to glean it) is that different assumptions can lead to different conclusions from the same data. And you don't mean the general assumptions that all of science makes (about rationality and humans senses and the like), but something more specific. In fact, you think this is a big deal and something that is often overlooked. So, if this effect really occurs on a large scale, there must be some examples of it. What are they? I'm trying to determine whether this thread is about anything at all. (I think my caution is justified, based on decades of observing creationists. They often say that they use the same data as biologists, but simply interpret them differently, but in practice they tend to flee data rather than interpret them.)This leaves the impression that if I said more, your reply would only be a hip shot.
Give examples from mechanics, then. What assumptions does one make that could be changed, and that would lead to different conclusions that are still consistent with observation? I'm familiar with physics, and I can't think of any. There are assumptions that go into the mathematical construction of any theory or model, but these are tested when the model is compared to observations. For example, special relativity assumes a constant speed of light. That doesn't mean that you would have an equally viable theory if you dropped that assumption; instead, you would have a theory that was inconsistent with data. Or more precisely, every theory in the broad classes that people have been able to come up with would be inconsistent with the data.I don't either. My experience is in mechanics, where I am very much aware of the assumptions underpinning the science I use and the implications of those assumptions. I get the impression that people think I have no respect for science because I don't take it as some kind of absolute truth. That is not at all the case. Understanding the limitations of mechanics better informs my use of it.
Similar but less absolute assumptions are made in constructing other theories in physics. One can formulate models of mechanics that assume perfect rigid body motion. These theories are known to be wrong, but are employed anyway because they are useful approximations; again, the validity of the assumptions is tested (and in some cases rejected, if rigid bodies are not a good approximation in those cases) by comparison with data.
Again, what are these codified assumptions in physics? I have a PhD in physics, and I'm still unclear on what you're talking about.It also seems that (so far) no one involved with this thread really knows what the assumptions of biology are. I'm not talking about vague, philosophical generalities. I'm talking about codified assumptions - like what physics can point to. I tried looking for them myself and didn't find much. A few people have taken a shot at it, but not people with high standing in the biological sciences and nothing I've found seems to be generally accepted. In fact, the most common comment I've found is to point to physics & chemistry and say that biology is built upon those sciences. Not sure I completely agree with that from what I understand of it.
I would think textbooks would be a bad place to look for an accurate analysis of the assumptions of any field, since they seldom reflect actual scientific practice, but are instead a reformulation of scientific results into a form that can be grasped by a newcomer to the field.So, let's take comparative genomics. A good place to start would be to look at a respected textbook dealing with the subject. Is there one you would suggest?
Comparative genomics makes the kind of basic assumptions that you're not interested in, e.g. the theory that makes the best predictions is the one that should be adopted. Thus, the assumption that common descent explains the patterns of genetic similarities and differences between species leads to better predictions than any other that has been offered, so it is assumed that common descent is the most accurate model and is adopted. Again, processes known to occur are preferred to ones that aren't known to occur; thus, natural selection and genetic drift are preferred to alien genetic engineering, since the former but not the latter can be observed occurring. (This assumption is hardly mandatory, however: endosymbiosis had not been observed when it was proposed or accepted as an explanation for mitochondria and chloroplasts, but it explained data better and made better predictions than processes that had been observed to occur, and so was accepted anyway.)
But you say these kinds of assumption are not what you're talking about. I really don't see what other, more specific assumptions there are in the field, nor how they would change the conclusions. (Note that, while I rarely do comparative genomics, I am a geneticist and study genomics within a species all the time, so I have a reasonable grasp of the field.) This is why I'm trying to get a better handle on what kinds of assumptions you're actually talking about.
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