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The Fossil Record Proves Speciation, Not Evolution of Lifeforms Observed

DogmaHunter

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we can also arrange c ats in hierarchy from the small one to the big one. but it doesnt prove they evolved from each other in such order.

Nested hierarchies aren't about arranging them from small to big.

Off course, it's already rather clear that you don't really care about how things really are. You prefer arguing from imagination.
 
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DogmaHunter

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Richard Dawkins once said evolution gives the appearence of design. That appearence goes right down to the molecular level. So in some ways Dawkins is acknowledging that life has all the hallmarks of design. He and others just attribute that ability to create something that looks designed to a naturalistic process but can never explain how that happens. Over time as we have discovered how complex life is they have had to credit evolution (natural selection) with more and more creative power and yet cannot explain how this can happen which really requires faith to believe. That is why Dawkins is always praising natural selections ability to just about create anything.

Looking up at the sky gives the appearance that the sun orbits the earth.

I shouldn't have to say anything else, before you understand your own reasoning error.
 
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DogmaHunter

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If so, back to the OP, why don't we see transitional fossils? If what you said is true, then we should a A LOT, A WHOLE LOT transitional fossils.


I already gave you examples of transitionals, remember?
I even first asked you to define what a transitional was. Eventually, after asking many times in different postings, you managed to put up some kind of definition.

I then provided you with fossils that matched that definition exactly.

And you rejected them out of hand.

Now, you are asking again "why are there no transitionals?".

So, to repeat:
- you defined what you meant by "transitional"
- I then posted you several examples of exactly that
-
Now, you are here again asking why there are no transitionals.

So...... what's that about?
What should we conclude from this intellectual dishonesty?


Millions of years passed, how many transitional human have we found?

Ow, several species were identified and from each such species, we have quite a few specimen. Hundreds, in some cases.

But why would anyone here bother to point you to them?
We all know you're just going to give them the same treatment as my examples....

First, you'll make up a few very poor excuses.
Second, you'll go quite for a few posts.
Third, when the exact examples of what you asked for has "disappeared" somewhere in the previous pages of the thread, you'll come back here with a post "why are there no transitionals???"



What, did you think that nobody noticed?
 
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xianghua

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Like I said, all an intelligently designed life form would demonstrate is that some life forms were designed. But your made up bio-cars don't even exist.

You argument is so poor, that it's sad. You postulate made up evidence that, even if it did exist, would be insufficient to falsify evolution.

Finding a pile of dirt put there by a guy with a shovel isn't evidence that a guy with a shovel created every pile or hill.
so a self replicating car need design or not?
 
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Shemjaza

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so a self replicating car need design or not?
I don't know. Probably.

It's your made up idea, I'm not sure about the details.
so if those cars were able to reproduce you will say they evolved from each other?
Why would we?
We don't assume that about modern animals in the real world, so why would we assume it about your magical animal-cars?

The theory of evolution works from evidence in the real world. Exactly what exceptions happen in Imagination Land where cars are animals and everything that looks similar has the same origin, is totally up to you.
 
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DogmaHunter

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so if those cars were able to reproduce you will say they evolved from each other?

Cars don't reproduce.
Cars aren't biological entities. So why would anyone claim them to be subject to biological processes?

Anyone except you, off course.
 
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Larniavc

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so if those cars were able to reproduce you will say they evolved from each other?
Of course not. Only a completely clueless ignoramus would say that.
 
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juvenissun

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I already gave you examples of transitionals, remember?
I even first asked you to define what a transitional was. Eventually, after asking many times in different postings, you managed to put up some kind of definition.

I then provided you with fossils that matched that definition exactly.

And you rejected them out of hand.

Now, you are asking again "why are there no transitionals?".

So, to repeat:
- you defined what you meant by "transitional"
- I then posted you several examples of exactly that
-
Now, you are here again asking why there are no transitionals.

So...... what's that about?
What should we conclude from this intellectual dishonesty?




Ow, several species were identified and from each such species, we have quite a few specimen. Hundreds, in some cases.

But why would anyone here bother to point you to them?
We all know you're just going to give them the same treatment as my examples....

First, you'll make up a few very poor excuses.
Second, you'll go quite for a few posts.
Third, when the exact examples of what you asked for has "disappeared" somewhere in the previous pages of the thread, you'll come back here with a post "why are there no transitionals???"



What, did you think that nobody noticed?

What is the name of transitional human which is 50% human, and 50% ???
 
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Bungle_Bear

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What is the name of transitional human which is 50% human, and 50% ???
By your own definition you're a bad student. If you won't listen, why should we continue correcting the same mistakes you make again and again and again?
 
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DogmaHunter

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What is the name of transitional human which is 50% human, and 50% ???

No idea what you mean by that "50% this, 50% that" nonsense.

And, again, why would I bother giving you any more examples? You're just going to ignore it again. Want to prove me wrong? Acknowledge the examples of transitionals that were already given to you.
 
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stevevw

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Looking up at the sky gives the appearance that the sun orbits the earth.

I shouldn't have to say anything else, before you understand your own reasoning error.
Poor example and similar to the face in the clouds example. There is nowhere near as much detail and other observational evidence that we can look at with the intricate complexity of the human workings that can point to design.
 
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stevevw

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Specified information is unmeasurable and not really defined clearly.
Specified information is earliy measrurable and defined. As with the examples of the face in the clouds which is a rough outline of something we know is more detailed. It is the detail of facial features that determine the complexity and specified information and is the difference between a rough image of a face and a real face and how we can tell designed.

Dembski has defended "specified complexity"-or "complex specified information" (CSI)-as a reliable design detection criterion in numerous writings, including his peer-reviewed paper, The Design Inference.

In simplified sum, a long string of random letters is complex without being specified (that is, without conforming to an independently given pattern that we have not simply read off the object or event in question). A short sequence of letters like "this" or "that" is specified without being sufficiently complex to outstrip the capacity of chance to explain this conformity (for example, letters drawn at random from a Scrabble bag will occasionally form a short word). Neither complexity without specificity nor specificity without complexity compels us to infer design. However, this paper is both specified (conforming to the functional requirements of grammatical English) and sufficiently complex (doing so at a level of complexity that makes it unreasonable to attribute this match to luck) to trigger a design inference on the grounds that "in all cases where we know the causal origin of . . . specified complexity, experience has shown that intelligent design played a causal role.

William Albert Dembski, The Design Inference: Eliminating Chance Through Small Probabilities - PhilPapers

Other mainstream academic such as Dawkins have also implicitly supported specified info. By arguing that objects may lack specified info and complexity when measuring design, they are implicitly supporting complex specific info.
The Design Inference from Specified Complexity Defended by Scholars Outside the Intelligent Design Movement

The thing about specified and complex info is that it is also about functional info as in biology. This paper seems to show that it is near impossible for evolution to produce the type of functional info needed to produce the high level of complex and specific info for life.

Estimating the prevalence of protein sequences adopting functional enzyme folds: Doug Axe:
Excerpt: The prevalence of low-level function in four such experiments indicates that roughly one in 10^64 signature-consistent sequences forms a working domain. Combined with the estimated prevalence of plausible hydropathic patterns (for any fold) and of relevant folds for particular functions, this implies the overall prevalence of sequences performing a specific function by any domain-sized fold may be as low as 1 in 10^77, adding to the body of evidence that functional folds require highly extraordinary sequences.
Estimating the prevalence of protein sequences adopting functional enzyme folds. - PubMed - NCBI

The bald assertion that evolution can't account for it has never been backed up by ID researchers.
First you say specified info cannot be defined and then you question the assertion that evolution cannot account for it. As described above it is about specific complex info and what I find with explanations from evolution when they claim that it can create things like eyes is that they may give a rough explanation for how evolution may create a simple step but never any detail of the other 99% of steps that fill in the detail of the rest. An eye patch is easy to explain though I think the explanation is still short of the mark as an eye patch has much more detail than ever given. But if you go to the level of a human eye where there is much more detail there is no way evolution can explain or account for this through a detailed step by step explanation. That is the specified and complex info that is required for design.

What other explanations? Stretching "But not evolution!" into a career might be keeping the Discovery Institute open, but it isn't actually evidence.
The other explanations I was thinking of have nothing to do with the Discovery Institute. Really, they come from mainstream science. For example, in the paper Does evolutionary theory need a rethink? Which probably sums up most of the ideas within the new synthesis and attribute change to other mechanisms that Darwinian evolution relegates to the sidelines as noise but are now being shown as causes perhaps more than natural selection.
Does evolutionary theory need a rethink?
We believe that the EES will shed new light on how evolution works. We hold that organisms are constructed in development, not simply ‘programmed’ to develop by genes. Living things do not evolve to fit into pre-existing environments, but co-construct and coevolve with their environments, in the process changing the structure of ecosystems.


The story that SET tells is simple: new variation arises through random genetic mutation; inheritance occurs through DNA; and natural selection is the sole cause of adaptation, the process by which organisms become well-suited to their environments. In this view, the complexity of biological development — the changes that occur as an organism grows and ages — are of secondary, even minor, importance.

In our view, this ‘gene-centric’ focus fails to capture the full gamut of processes that direct evolution. Missing pieces include how physical development influences the generation of variation (developmental bias); how the environment directly shapes organisms’ traits (plasticity); how organisms modify environments (niche construction); and how organisms transmit more than genes across generations (extra-genetic inheritance). For SET, these phenomena are just outcomes of evolution. For the EES, they are also causes.


Valuable insight into the causes of adaptation and the appearance of new traits comes from the field of evolutionary developmental biology (‘evo-devo’). Some of its experimental findings are proving tricky to assimilate into SET. Particularly thorny is the observation that much variation is not random because developmental processes generate certain forms more readily than others3.
http://www.sciencedaily.com/releases/2009/01/090107134529.htm

So, from what I understand with the above paper is that living things have an inbuilt mechanism that allows them to switch on genes in development and in life and change features that help them adapt to environments. They may even work with in other creatures and organisms and the environment when they are under pressure and can turn on the right sort of genetic material needed or extract it from their surroundings and other living things rather than go through some random and blind process of hit and miss finding the right stuff through mutation and natural selection to adapt.

There is no barrier to evolution working on more complicated systems. If a mutation arises that damages some individuals ability to function in the system then it will not thrive. If the hypothetical mutation is able to spread among the population, but unbalances the system, then species will go extinct, this isn't a problem because evolution isn't a god, it's just a process which no one who researches it expects to be perfect.
It is not just that evolution may weed out any harmful mutations but that it is capable of evolving complex networks and systems in the first place.

According to Lynch Natural selection is insufficient and even perhaps not a necessary force for evolving the complexity of organisms and there are non-adaptive forces which are more likely to evolve complexity.
The frailty of adaptive hypotheses for the origins of organismal complexity
What is in question is whether natural selection is a necessary or sufficient force to explain the emergence of the genomic and cellular features central to the building of complex organisms.


Jacob (46) argues that “it is natural selection that gives direction to changes, orients chance, and slowly, progressively produces more complex structures, new organs, and new species.” The vast majority of biologists almost certainly agree with such statements. But where is the direct supportive evidence for the assumption that complexity is rooted in adaptive processes? No existing observations support such a claim and given the massive global dominance of unicellular species over multicellular eukaryotes, both in terms of species richness and numbers of individuals, if there is an advantage of organismal complexity, one can only marvel at the inability of natural selection to promote it.


Lynch again questions Natural selections ability in that compared to simple organism’s complex creatures suffer a lot more problems which implicates evolution by natural selection and random mutation as being something that harms complex life by introducing more deleterious mutations.


Multicellular species experience reduced population sizes, reduced recombination rates, and increased deleterious mutation rates, all of which diminish the efficiency of selection (13). It may be no coincidence that such species also have substantially higher extinction rates than do unicellular taxa (47, 48).


Lynch also supports what is mentioned above in that it is not natural selection but other processes through development that allow living things to change and adapt to their environments.

One could even argue that the stringency of natural selection is reduced in complex organisms with behavioral and/or growth-form flexibilities that allow individuals to match their phenotypic capabilities to the local environment. Some of these shortcomings have recently attracted attention, and a scaffold for connecting evolutionary genetics, genomics, and developmental biology is slowly beginning to emerge (5966).

As far as natural selection weeding out deleterious mutations and keeping beneficial ones in populations Lynch states that

Thus, contrary to popular belief, natural selection may not only be an insufficient mechanism for the origin of genetic modularity, but population-genetic environments that maximize the efficiency of natural selection may actually promote the opposite situation, alleles under unified transcriptional control.
The frailty of adaptive hypotheses for the origins of organismal complexity

Eugene Koonin also seems to agree and think along similar lines.
Darwinian evolution in the light of genomics
Evolutionary-genomic studies show that natural selection is only one of the forces that shape genome evolution and is not quantitatively dominant, whereas non-adaptive processes are much more prominent than previously suspected. Major contributions of horizontal gene transfer and diverse selfish genetic elements to genome evolution undermine the Tree of Life concept. An adequate depiction of evolution requires the more complex concept of a network or ‘forest’ of life. There is no consistent tendency of evolution towards increased genomic complexity, and when complexity increases, this appears to be a non-adaptive consequence of evolution under weak purifying selection rather than an adaptation.
Darwinian evolution in the light of genomics

There are many other scientists who say similar things. For me it is also about the origins of complex features. As some scientists talking about the new synthesis have said natural selection is good at explaining the survival of the fittest but not the arrival of the fittest. There may be support that complex life having always been around from the beginning or at least having some code that could switch on new functions rather than having to create this from a blind and random process which implies a more directed process and seems to fit with the observations being found especially with ideas from the new synthesis of evolution and how the fossil evidence shows the sudden appearence of well defined life such as in the Cambrian explosion.

Universal Genome in the Origin of Metazoa: Thoughts About Evolution
According to this model, (a) the Universal Genome that encodes all major developmental programs essential for various phyla of Metazoa emerged in a unicellular or a primitive multicellular organism shortly before the Cambrian period; (b) The Metazoan phyla, all having similar genomes, are nonetheless so distinct because they utilize specific combinations of developmental programs. This model has two major predictions, first that a significant fraction of genetic information in lower taxons must be functionally useless but becomes useful in higher taxons, and second that one should be able to turn on in lower taxons some of the complex latent developmental programs.
http://www.researchgate.net/publica...he_Origin_of_Metazoa_Thoughts_About_Evolution
 
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Shemjaza

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Specified information is earliy measrurable and defined. As with the examples of the face in the clouds which is a rough outline of something we know is more detailed. It is the detail of facial features that determine the complexity and specified information and is the difference between a rough image of a face and a real face and how we can tell designed.

Dembski has defended "specified complexity"-or "complex specified information" (CSI)-as a reliable design detection criterion in numerous writings, including his peer-reviewed paper, The Design Inference.

In simplified sum, a long string of random letters is complex without being specified (that is, without conforming to an independently given pattern that we have not simply read off the object or event in question). A short sequence of letters like "this" or "that" is specified without being sufficiently complex to outstrip the capacity of chance to explain this conformity (for example, letters drawn at random from a Scrabble bag will occasionally form a short word). Neither complexity without specificity nor specificity without complexity compels us to infer design. However, this paper is both specified (conforming to the functional requirements of grammatical English) and sufficiently complex (doing so at a level of complexity that makes it unreasonable to attribute this match to luck) to trigger a design inference on the grounds that "in all cases where we know the causal origin of . . . specified complexity, experience has shown that intelligent design played a causal role.

William Albert Dembski, The Design Inference: Eliminating Chance Through Small Probabilities - PhilPapers

Other mainstream academic such as Dawkins have also implicitly supported specified info. By arguing that objects may lack specified info and complexity when measuring design, they are implicitly supporting complex specific info.
The Design Inference from Specified Complexity Defended by Scholars Outside the Intelligent Design Movement

The thing about specified and complex info is that it is also about functional info as in biology. This paper seems to show that it is near impossible for evolution to produce the type of functional info needed to produce the high level of complex and specific info for life.

Estimating the prevalence of protein sequences adopting functional enzyme folds: Doug Axe:
Excerpt: The prevalence of low-level function in four such experiments indicates that roughly one in 10^64 signature-consistent sequences forms a working domain. Combined with the estimated prevalence of plausible hydropathic patterns (for any fold) and of relevant folds for particular functions, this implies the overall prevalence of sequences performing a specific function by any domain-sized fold may be as low as 1 in 10^77, adding to the body of evidence that functional folds require highly extraordinary sequences.
Estimating the prevalence of protein sequences adopting functional enzyme folds. - PubMed - NCBI

First you say specified info cannot be defined and then you question the assertion that evolution cannot account for it. As described above it is about specific complex info and what I find with explanations from evolution when they claim that it can create things like eyes is that they may give a rough explanation for how evolution may create a simple step but never any detail of the other 99% of steps that fill in the detail of the rest. An eye patch is easy to explain though I think the explanation is still short of the mark as an eye patch has much more detail than ever given. But if you go to the level of a human eye where there is much more detail there is no way evolution can explain or account for this through a detailed step by step explanation. That is the specified and complex info that is required for design.

The other explanations I was thinking of have nothing to do with the Discovery Institute. Really, they come from mainstream science. For example, in the paper Does evolutionary theory need a rethink? Which probably sums up most of the ideas within the new synthesis and attribute change to other mechanisms that Darwinian evolution relegates to the sidelines as noise but are now being shown as causes perhaps more than natural selection.
Does evolutionary theory need a rethink?
We believe that the EES will shed new light on how evolution works. We hold that organisms are constructed in development, not simply ‘programmed’ to develop by genes. Living things do not evolve to fit into pre-existing environments, but co-construct and coevolve with their environments, in the process changing the structure of ecosystems.


The story that SET tells is simple: new variation arises through random genetic mutation; inheritance occurs through DNA; and natural selection is the sole cause of adaptation, the process by which organisms become well-suited to their environments. In this view, the complexity of biological development — the changes that occur as an organism grows and ages — are of secondary, even minor, importance.

In our view, this ‘gene-centric’ focus fails to capture the full gamut of processes that direct evolution. Missing pieces include how physical development influences the generation of variation (developmental bias); how the environment directly shapes organisms’ traits (plasticity); how organisms modify environments (niche construction); and how organisms transmit more than genes across generations (extra-genetic inheritance). For SET, these phenomena are just outcomes of evolution. For the EES, they are also causes.


Valuable insight into the causes of adaptation and the appearance of new traits comes from the field of evolutionary developmental biology (‘evo-devo’). Some of its experimental findings are proving tricky to assimilate into SET. Particularly thorny is the observation that much variation is not random because developmental processes generate certain forms more readily than others3.
http://www.sciencedaily.com/releases/2009/01/090107134529.htm

So, from what I understand with the above paper is that living things have an inbuilt mechanism that allows them to switch on genes in development and in life and change features that help them adapt to environments. They may even work with in other creatures and organisms and the environment when they are under pressure and can turn on the right sort of genetic material needed or extract it from their surroundings and other living things rather than go through some random and blind process of hit and miss finding the right stuff through mutation and natural selection to adapt.

It is not just that evolution may weed out any harmful mutations but that it is capable of evolving complex networks and systems in the first place.

According to Lynch Natural selection is insufficient and even perhaps not a necessary force for evolving the complexity of organisms and there are non-adaptive forces which are more likely to evolve complexity.
The frailty of adaptive hypotheses for the origins of organismal complexity
What is in question is whether natural selection is a necessary or sufficient force to explain the emergence of the genomic and cellular features central to the building of complex organisms.


Jacob (46) argues that “it is natural selection that gives direction to changes, orients chance, and slowly, progressively produces more complex structures, new organs, and new species.” The vast majority of biologists almost certainly agree with such statements. But where is the direct supportive evidence for the assumption that complexity is rooted in adaptive processes? No existing observations support such a claim and given the massive global dominance of unicellular species over multicellular eukaryotes, both in terms of species richness and numbers of individuals, if there is an advantage of organismal complexity, one can only marvel at the inability of natural selection to promote it.


Lynch again questions Natural selections ability in that compared to simple organism’s complex creatures suffer a lot more problems which implicates evolution by natural selection and random mutation as being something that harms complex life by introducing more deleterious mutations.


Multicellular species experience reduced population sizes, reduced recombination rates, and increased deleterious mutation rates, all of which diminish the efficiency of selection (13). It may be no coincidence that such species also have substantially higher extinction rates than do unicellular taxa (47, 48).


Lynch also supports what is mentioned above in that it is not natural selection but other processes through development that allow living things to change and adapt to their environments.

One could even argue that the stringency of natural selection is reduced in complex organisms with behavioral and/or growth-form flexibilities that allow individuals to match their phenotypic capabilities to the local environment. Some of these shortcomings have recently attracted attention, and a scaffold for connecting evolutionary genetics, genomics, and developmental biology is slowly beginning to emerge (5966).

As far as natural selection weeding out deleterious mutations and keeping beneficial ones in populations Lynch states that

Thus, contrary to popular belief, natural selection may not only be an insufficient mechanism for the origin of genetic modularity, but population-genetic environments that maximize the efficiency of natural selection may actually promote the opposite situation, alleles under unified transcriptional control.
The frailty of adaptive hypotheses for the origins of organismal complexity

Eugene Koonin also seems to agree and think along similar lines.
Darwinian evolution in the light of genomics
Evolutionary-genomic studies show that natural selection is only one of the forces that shape genome evolution and is not quantitatively dominant, whereas non-adaptive processes are much more prominent than previously suspected. Major contributions of horizontal gene transfer and diverse selfish genetic elements to genome evolution undermine the Tree of Life concept. An adequate depiction of evolution requires the more complex concept of a network or ‘forest’ of life. There is no consistent tendency of evolution towards increased genomic complexity, and when complexity increases, this appears to be a non-adaptive consequence of evolution under weak purifying selection rather than an adaptation.
Darwinian evolution in the light of genomics

There are many other scientists who say similar things. For me it is also about the origins of complex features. As some scientists talking about the new synthesis have said natural selection is good at explaining the survival of the fittest but not the arrival of the fittest. There may be support that complex life having always been around from the beginning or at least having some code that could switch on new functions rather than having to create this from a blind and random process which implies a more directed process and seems to fit with the observations being found especially with ideas from the new synthesis of evolution and how the fossil evidence shows the sudden appearence of well defined life such as in the Cambrian explosion.

Universal Genome in the Origin of Metazoa: Thoughts About Evolution
According to this model, (a) the Universal Genome that encodes all major developmental programs essential for various phyla of Metazoa emerged in a unicellular or a primitive multicellular organism shortly before the Cambrian period; (b) The Metazoan phyla, all having similar genomes, are nonetheless so distinct because they utilize specific combinations of developmental programs. This model has two major predictions, first that a significant fraction of genetic information in lower taxons must be functionally useless but becomes useful in higher taxons, and second that one should be able to turn on in lower taxons some of the complex latent developmental programs.
http://www.researchgate.net/publica...he_Origin_of_Metazoa_Thoughts_About_Evolution
Specified information is earliy measrurable and defined. As with the examples of the face in the clouds which is a rough outline of something we know is more detailed. It is the detail of facial features that determine the complexity and specified information and is the difference between a rough image of a face and a real face and how we can tell designed.

Dembski has defended "specified complexity"-or "complex specified information" (CSI)-as a reliable design detection criterion in numerous writings, including his peer-reviewed paper, The Design Inference.

In simplified sum, a long string of random letters is complex without being specified (that is, without conforming to an independently given pattern that we have not simply read off the object or event in question). A short sequence of letters like "this" or "that" is specified without being sufficiently complex to outstrip the capacity of chance to explain this conformity (for example, letters drawn at random from a Scrabble bag will occasionally form a short word). Neither complexity without specificity nor specificity without complexity compels us to infer design. However, this paper is both specified (conforming to the functional requirements of grammatical English) and sufficiently complex (doing so at a level of complexity that makes it unreasonable to attribute this match to luck) to trigger a design inference on the grounds that "in all cases where we know the causal origin of . . . specified complexity, experience has shown that intelligent design played a causal role.

William Albert Dembski, The Design Inference: Eliminating Chance Through Small Probabilities - PhilPapers

Other mainstream academic such as Dawkins have also implicitly supported specified info. By arguing that objects may lack specified info and complexity when measuring design, they are implicitly supporting complex specific info.
The Design Inference from Specified Complexity Defended by Scholars Outside the Intelligent Design Movement

The thing about specified and complex info is that it is also about functional info as in biology. This paper seems to show that it is near impossible for evolution to produce the type of functional info needed to produce the high level of complex and specific info for life.

Estimating the prevalence of protein sequences adopting functional enzyme folds: Doug Axe:
Excerpt: The prevalence of low-level function in four such experiments indicates that roughly one in 10^64 signature-consistent sequences forms a working domain. Combined with the estimated prevalence of plausible hydropathic patterns (for any fold) and of relevant folds for particular functions, this implies the overall prevalence of sequences performing a specific function by any domain-sized fold may be as low as 1 in 10^77, adding to the body of evidence that functional folds require highly extraordinary sequences.
Estimating the prevalence of protein sequences adopting functional enzyme folds. - PubMed - NCBI

First you say specified info cannot be defined and then you question the assertion that evolution cannot account for it. As described above it is about specific complex info and what I find with explanations from evolution when they claim that it can create things like eyes is that they may give a rough explanation for how evolution may create a simple step but never any detail of the other 99% of steps that fill in the detail of the rest. An eye patch is easy to explain though I think the explanation is still short of the mark as an eye patch has much more detail than ever given. But if you go to the level of a human eye where there is much more detail there is no way evolution can explain or account for this through a detailed step by step explanation. That is the specified and complex info that is required for design.

The other explanations I was thinking of have nothing to do with the Discovery Institute. Really, they come from mainstream science. For example, in the paper Does evolutionary theory need a rethink? Which probably sums up most of the ideas within the new synthesis and attribute change to other mechanisms that Darwinian evolution relegates to the sidelines as noise but are now being shown as causes perhaps more than natural selection.
Does evolutionary theory need a rethink?
We believe that the EES will shed new light on how evolution works. We hold that organisms are constructed in development, not simply ‘programmed’ to develop by genes. Living things do not evolve to fit into pre-existing environments, but co-construct and coevolve with their environments, in the process changing the structure of ecosystems.


The story that SET tells is simple: new variation arises through random genetic mutation; inheritance occurs through DNA; and natural selection is the sole cause of adaptation, the process by which organisms become well-suited to their environments. In this view, the complexity of biological development — the changes that occur as an organism grows and ages — are of secondary, even minor, importance.

In our view, this ‘gene-centric’ focus fails to capture the full gamut of processes that direct evolution. Missing pieces include how physical development influences the generation of variation (developmental bias); how the environment directly shapes organisms’ traits (plasticity); how organisms modify environments (niche construction); and how organisms transmit more than genes across generations (extra-genetic inheritance). For SET, these phenomena are just outcomes of evolution. For the EES, they are also causes.


Valuable insight into the causes of adaptation and the appearance of new traits comes from the field of evolutionary developmental biology (‘evo-devo’). Some of its experimental findings are proving tricky to assimilate into SET. Particularly thorny is the observation that much variation is not random because developmental processes generate certain forms more readily than others3.
http://www.sciencedaily.com/releases/2009/01/090107134529.htm

So, from what I understand with the above paper is that living things have an inbuilt mechanism that allows them to switch on genes in development and in life and change features that help them adapt to environments. They may even work with in other creatures and organisms and the environment when they are under pressure and can turn on the right sort of genetic material needed or extract it from their surroundings and other living things rather than go through some random and blind process of hit and miss finding the right stuff through mutation and natural selection to adapt.

It is not just that evolution may weed out any harmful mutations but that it is capable of evolving complex networks and systems in the first place.

According to Lynch Natural selection is insufficient and even perhaps not a necessary force for evolving the complexity of organisms and there are non-adaptive forces which are more likely to evolve complexity.
The frailty of adaptive hypotheses for the origins of organismal complexity
What is in question is whether natural selection is a necessary or sufficient force to explain the emergence of the genomic and cellular features central to the building of complex organisms.


Jacob (46) argues that “it is natural selection that gives direction to changes, orients chance, and slowly, progressively produces more complex structures, new organs, and new species.” The vast majority of biologists almost certainly agree with such statements. But where is the direct supportive evidence for the assumption that complexity is rooted in adaptive processes? No existing observations support such a claim and given the massive global dominance of unicellular species over multicellular eukaryotes, both in terms of species richness and numbers of individuals, if there is an advantage of organismal complexity, one can only marvel at the inability of natural selection to promote it.


Lynch again questions Natural selections ability in that compared to simple organism’s complex creatures suffer a lot more problems which implicates evolution by natural selection and random mutation as being something that harms complex life by introducing more deleterious mutations.


Multicellular species experience reduced population sizes, reduced recombination rates, and increased deleterious mutation rates, all of which diminish the efficiency of selection (13). It may be no coincidence that such species also have substantially higher extinction rates than do unicellular taxa (47, 48).


Lynch also supports what is mentioned above in that it is not natural selection but other processes through development that allow living things to change and adapt to their environments.

One could even argue that the stringency of natural selection is reduced in complex organisms with behavioral and/or growth-form flexibilities that allow individuals to match their phenotypic capabilities to the local environment. Some of these shortcomings have recently attracted attention, and a scaffold for connecting evolutionary genetics, genomics, and developmental biology is slowly beginning to emerge (5966).

As far as natural selection weeding out deleterious mutations and keeping beneficial ones in populations Lynch states that

Thus, contrary to popular belief, natural selection may not only be an insufficient mechanism for the origin of genetic modularity, but population-genetic environments that maximize the efficiency of natural selection may actually promote the opposite situation, alleles under unified transcriptional control.
The frailty of adaptive hypotheses for the origins of organismal complexity

Eugene Koonin also seems to agree and think along similar lines.
Darwinian evolution in the light of genomics
Evolutionary-genomic studies show that natural selection is only one of the forces that shape genome evolution and is not quantitatively dominant, whereas non-adaptive processes are much more prominent than previously suspected. Major contributions of horizontal gene transfer and diverse selfish genetic elements to genome evolution undermine the Tree of Life concept. An adequate depiction of evolution requires the more complex concept of a network or ‘forest’ of life. There is no consistent tendency of evolution towards increased genomic complexity, and when complexity increases, this appears to be a non-adaptive consequence of evolution under weak purifying selection rather than an adaptation.
Darwinian evolution in the light of genomics

There are many other scientists who say similar things. For me it is also about the origins of complex features. As some scientists talking about the new synthesis have said natural selection is good at explaining the survival of the fittest but not the arrival of the fittest. There may be support that complex life having always been around from the beginning or at least having some code that could switch on new functions rather than having to create this from a blind and random process which implies a more directed process and seems to fit with the observations being found especially with ideas from the new synthesis of evolution and how the fossil evidence shows the sudden appearence of well defined life such as in the Cambrian explosion.

Universal Genome in the Origin of Metazoa: Thoughts About Evolution
According to this model, (a) the Universal Genome that encodes all major developmental programs essential for various phyla of Metazoa emerged in a unicellular or a primitive multicellular organism shortly before the Cambrian period; (b) The Metazoan phyla, all having similar genomes, are nonetheless so distinct because they utilize specific combinations of developmental programs. This model has two major predictions, first that a significant fraction of genetic information in lower taxons must be functionally useless but becomes useful in higher taxons, and second that one should be able to turn on in lower taxons some of the complex latent developmental programs.
http://www.researchgate.net/publica...he_Origin_of_Metazoa_Thoughts_About_Evolution

I don't want quote mines from papers changing small details about evolution without challenging the conclusion of natural evolution and common ancestry.

I don't want Dembski ignoring the existence of selection as a part of evolution to reduce the chaos of random variation.

I want a specific way to measure specified information from a sample of data. Not hand waves and and personal judgement calls and special pleading.

Which has more information?
AAAGGGTACCT
AAGCGGTACCT


The reason I both claim that it can't be measured and that ID claims that evolution can't account for it is because I am convinced it is nonsense that ID merely claims is a barrier to evolution.
 
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DogmaHunter

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Poor example and similar to the face in the clouds example.

Not at all the same.
Given that the only known observation is that the sun comes up one side and sets at the other side, it actually makes it rational to believe it orbits the earth.

While it is never rational to believe that cloud that looks like a duck, is an actual duck.

There is nowhere near as much detail and other observational evidence that we can look at with the intricate complexity of the human workings that can point to design.

Complexity is not an indicator of design. Not even by a long shot.
 
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stevevw

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I don't want quote mines from papers changing small details about evolution without challenging the conclusion of natural evolution and common ancestry.
It is these small challenges that help us get things right and give a clearer picture of what is really going on. The point is there is a lot of assumption about how evolution works and just because someone supports common ancestry doesn’t mean that all those small bits that have been assumed that make up the theory are automatically correct. common ancestry can be the result of other processes besides Darwinian evolution.

I don't want Dembski ignoring the existence of selection as a part of evolution to reduce the chaos of random variation.
I don’t think any scientists denied the existence of natural selection. But his paper is not about that but how we can determine design and his theory of CSI is just one way of determining that.

I want a specific way to measure specified information from a sample of data. Not hand waves and and personal judgement calls and special pleading.
There is no hand waving or special pleading as Dembski paper is a peer reviewed article based on science, so I think if you read it you will understand how he explains complex specified info being a good way to detect design.

Which has more information?
AAAGGGTACCT
AAGCGGTACCT
What you are asking for with this example is Shannon info which is not how design in life is determined. According to Shannon info any difference even if it produces s dysfunctional sequence is an increase in info. As I mentioned the paper shows how CSI can determine design in life. CSI has a certain level of complexity and specified info that needs to be determined. Something can have complexity but not specified info and something can have specified info and not complexity.

If we take an enzyme which has hundreds of amino acids folded into a chain. Any link in the chain can be any one of around 20 different amino acids. Each link can have 100s if not 1000s of unique combinations that will make the enzyme functional to a specific job. So, there is specific information combos that are needed to produce functional proteins. But there are also millions of possible combos which will produce dysfunctional sequences. So, the functional combos are specified and complex info.
BBC - GCSE Bitesize: Amino acids to proteins

That is why I linked the paper showing how these specific functional proteins are very rare and Darwinian evolution process of random mutations and natural selection find it near impossible to produce. Therefore, there must be some other process that allows life to produce these specific proteins that is more directed.
Estimating the prevalence of protein sequences adopting functional enzyme folds. - PubMed - NCBI

The reason I both claim that it can't be measured and that ID claims that evolution can't account for it is because I am convinced it is nonsense that ID merely claims is a barrier to evolution.
I don’t think CSI is about making claims that evolution cannot account for the complexity and info in living things. It is just a theory about how to explain and measure design.[/quote][/QUOTE]
 
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