Shia Muslims have a tradition called temporal marriage (
Nikāḥ al-Mutʿah) that allows them to have sex with any woman (Muslim, Christian or Jew) by marrying her for a short time. Sunni Muslims don't have this tradition, so according to them Khomeini did a bad thing when he raped the little girl (without penetrating her). It is very likely that Khomeini actually did it, since he also published these fatwa:
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A man can quench his sexual lusts with a child as young as a baby. However, he should not penetrate. Sodomizing the baby is halal (allowed by sharia). If the man penetrates and damages the child, then he should be responsible for her subsistence all her life. This girl, however, does not count as one of his four permanent wives. The man will not be eligible to marry the girl’s sister. It is better for a girl to marry when her menstruation starts, and at her husband's house rather than her father's home. Any father marrying his daughter so young will have a permanent place in heaven." (Khomeini, "Tahrirolvasyleh" fourth volume, Darol Elm, Gom, Iran, 1990)
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It is not illegal for an adult male to 'thigh' or enjoy a young girl who is still in the age of weaning; meaning to place his penis between her thighs, and to kiss her.” (Ayatu Allah Al Khumaini's "Tahrir Al wasila" p. 241, issue number 12)
All of this is based on the behavior of Muhammad, who practiced these things with six-year-old Aisha.
Dude, read the damn document. It is very clear there that Maududi is inciting Muslims to use violence against non-Muslims. Lots of editions of the Qur'an have commentaries of Maududi in them. So, the violent words of that terrorist are widespread in Islam. By the way, you hate Jews because Muhammad taught you to hate them:
Sahih al-Bukhari, Volume 4, Book 56, Number 791:
Narrated 'Abdullah bin 'Umar:
I heard Allah's Apostle [Muhammad]saying, "The Jews will fight with you, and you will be given victory over them so that a stone will say, 'O Muslim! There is a Jew behind me; kill him!' "
Sahih al-Bukhari, Volume 4, Book 52, Number 176:
Narrated 'Abdullah bin 'Umar:
Allah's Apostle said, "You (i.e. Muslims) will fight with the Jews till some of them will hide behind stones. The stones will (betray them) saying, 'O 'Abdullah (i.e. slave of Allah)! There is a Jew hiding behind me; so kill him.' "
Sahih al-Bukhari, Volume 4, Book 52, Number 177:
Narrated Abu Huraira:
Allah's Apostle said, "The Hour will not be established until you fight with the Jews, and the stone behind which a Jew will be hiding will say. "O Muslim! There is a Jew hiding behind me, so kill him."
Sahih Muslim, Book 041, Number 6981:
Ibn 'Umar reported Allah's Messenger [Muhammad](may peace be upon him) as saying: You will fight against the Jews and you will kill them until even a stone would say: Come here, Muslim, there is a Jew (hiding himself behind me); kill him.