Here is the crystal structure of a protein binding to DNA:
Using those equations, determine if that protein is designed.
Show us how they are objective and can be applied to biology.
The best way to show that the protein picture you posted is designed or at least cannot be created by random mutations is from the tests done. Proteins have very complex 3D shapes which are necessary for that particular biological function. This is determined by the sequence of the different amino acids that make up that protein. So a mistake or a misshape in the folds will cause damage and therefore render it useless.
Sequences that produce stable, functional 3D structures in proteins are very rare and hard to produce. Scientists can’t randomly create stable proteins and have to resort to reverse engineering to make artificial proteins because they are so complex. So everything about proteins is designed to the point that humans have to study that design and make computer programs to even have a chance to make them. Indeed, our supercomputers are not powerful enough to crunch the variables and locate novel 3D structures.
http://www.evolutionnews.org/2015/07/computing_the_b098101.html
Test have been done to show that random mutations cannot evolve new functions in proteins let alone create them entirely.
Estimating the prevalence of protein sequences adopting functional enzyme folds.
Combined with the estimated prevalence of plausible hydropathic patterns (for any fold) and of relevant folds for particular functions, this implies the overall prevalence of sequences performing a specific function by any domain-sized fold may be as low as 1 in 10(77), adding to the body of evidence that functional folds require highly extraordinary sequences.
http://www.ncbi.nlm.nih.gov/pubmed/15321723
So the chances of evolution producing even a simple functional protein fold is 1 in 10(77). This is written out as 100, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000, 000). For all practical purposes, this has no chance of success. So if evolution cant even do this which is way simpler then how can be expect evolution to evolve the entire genetic makeups of creatures to produce functional systems and features. This is the level of complexity that a naturalistic and chance process cannot create out of nothing or simpler forms. There had to be some input form an intelligent source. All evolution is doing is giving the created things like nature the creative power that we see in life.
Another problem for a random process creating life is chirality. Proteins have a unique 3D shape, and it is because of this 3D shape that the biochemical processes within our bodies work as they do. It is chirality that provides the special shape for proteins, and without chirality, the biochemical processes in our bodies would not do their job. In our body, every single amino acid of every protein is found with the same left handed chirality. But our DNA molecules exist with a right handed optical isomer. So a random naturalistic process will evolve a mixture of 50/50 Left and right handed isomers for each. But not specifically all right for DNA molecules or Left for all proteins.
The twist that forms the double helix structure of DNA has chirality as well. It is this handedness that gives DNA the spiral shaped helical structure. If one molecule in the DNA structure had the wrong chirality, DNA would not exist in the double helix form, and DNA would not function properly.So thousands of proteins and the complex structure of DNA rely on exact coming together of mirror images that form opposite left and right handedness. Naturalistic process couldn't have that level of ability to know and evolve this preciseness. It would be random and have a mixture and even a small mixture would destroy the protein and DNA. This is similar to the fine tuned universe for life in that things needed to be exactly right for it to happen. So exact that it goes beyond accidental chance.
Species are also changing which shows that they are subject to natural forces.
Who said that natural forces are responsible for the ability for creatures to change. There is debate about how an animal gets the genetic info for that change. Some say that it comes from existing genetics or is gained from other creatures or microorganisms that the creature lives with. Or from other methods such as epigentics. This is part of the debate about whether the info is newly created through a naturalistic cause or is part of the blue print for life that has always been there.
It goes back to the ability of naturalistic processes to create complex info from something more simple that hasn't got that complexity in the first place. It goes back to being able to create something out of nothing. Like I said maybe some are giving evolution more creative power than it has. Maybe they are making the created like nature and time the gods rather than giving the credit to the true creator behind everything that started it all in the first place.