He didn't. The problem is with your ToE which cannot tell us the difference between Humans (descendants of Adam) and prehistoric people (descendants of the common ancestor of Apes). IOW, it's an incomplete, untrue, made up theory of godless men who REJECT God's Truth in Genesis.
***Why would a designer place a broken GULO gene in all Haplorhine primates including humans?
It doesn't matter since I just refuted (proved wrong) your false ToE. You are left all alone twisting slowly, slowly in the wind.
*** Why would a designer place a broken gene pathway for hind limb development in whales and dolphins?
Why would a designer place broken VTG genes for egg yolk sac development in therian (marsupial and placental) mammals?
Evolution explains all of these things, "common design" does not.
Sure it does since there would be NO living creatures if God had not created them. Your feeble part truth leaves out that part too, since it has no idea where the creatures it studies had their origin. Hint: We are His and Their kinds. Amen?