ok. lets start with the second paper. they even admit that they start with a light sensitive patch. so their first step is again too complex to begin with. it's actually prove my point that some steps need at least several parts at once. otherwise they were able to show how the first light detector evolved. but they cant.
The fact they opted to start with a light sensitive patch (which makes since given that they are modeling the evolution of more complex eyes) in no way 'proves' that light sensitive patches are too complex to evolve naturally. In fact, if that's your entire objection to the paper, then it's pretty weak sauce. You're continually falling back on an
argument from incredulity, which is a pretty terrible argument to begin with.
If you want to demonstrate that something is impossible to evolve, you need to demonstrate some sort of physical barriers. You still haven't done that.
Furthermore, I linked over a half dozen papers, some of which do touch on pathways for the evolution of the first photoreceptors. I suggest spending more time researching this topic.
First, there is no "id model". Second, even if there was an ID model, it's not the null hypothesis in this case. Third, claiming 'victory points' in these discussions is incredibly tacky and reeks of desperation.
they also admit (in section 2) that their model is base upon several assumptions. so they even admit that it's base upon assumption and cant be prove.
Of course there are assumptions. That's how formulating hypotheses or building scientific models works. Invariably we're dealing with incomplete information and that is where assumptions are required. If we had 100% complete information about reality, there would be no need for scientific modeling in the first place.
Do you understand how science works? Maybe you need to familiarize yourself with the scientific method before trying to read any more scientific literature:
Scientific method - Wikipedia
the same for the flagellum paper: they claiming that the flagellum shared several similar proteins with the tts system. but it doesnt mean that they can evolve from each other.
It also doesn't mean they can't. And given what we do know about evolutionary change, functional shifts and so on, you would need to demonstrate the existence of a physical barrier preventing such evolution to be able to properly object to it. Thus far, you haven't shown anything of that kind.
Your entire objections are summed up with hand-waving dismissals and arguments from incredulity.