I read the article thanks. Mueller's message is summed up in the conclusion...
This is an exciting period in evolutionary biology. The principal Darwinian research tradition is upheld, but the specifics of evolutionary theory structure are undergoing ferment, including the revision of some of its traditional elements and the incorporation of new elements. Instead of privileging selected mechanisms such as random variation, genetic control and natural selection, the multitude of factors that dynamically interact in the evolutionary process will be better expounded by a pluralistic theory framework. Current evolutionary research already reflects this pluralism, and as many of its underlying concepts have drifted from the standard theoretical paradigm, an adjusted evolutionary framework that adequately synthesizes the multitude of new theoretical elements has become a necessity. The EES represents one possibility for such integration.
If you'd like to know why I said Borg's article is propagandist rubbish....
Gerd Müller, a highly regarded Austrian evolutionary theorist, recently gave a presentation, published in Interface Focus, in which he admitted Charlies Darwin’s theory largely avoids explaining how life originated and how complexity developed.
He "admitted" no such thing, Darwin's theory didn't deal with abiogenesis, why would he need to make such an admission?
I'd be interested to see where you think he "admits" that "Charles Darwin's theory" avoids explaining how complexity developed, I couldn't see where he said that.
You need some background in order to provide context. There was no abiogenesis during Darwin's time. It was pseudoscientific spontaneous generation. This was his origins. We all know that Darwin was interested in origins.
"The letter was mailed to Hooker on February 1st, 1871.
Down,Beckenham, Kent, S.E. My dear Hooker,
... It is often said that all the conditions for the first production of a living organism are now present, which could ever have been present.
But if (and oh what a big if) we could conceive in some warm little pond with all sorts of ammonia and phosphoric salts,—light, heat, electricity &c. present, that a protein compound was chemically formed, ready to undergo still more complex changes, at the present day such matter wd be instantly devoured, or absorbed, which would not have been the case before living creatures were formed."
Charles Darwin - the spontaneous generation of life in some - warm little pond
Now, I'm going to walk a fine line between what ID said because it is not what creation science states. Today, people have taken out origins from the ToE because the science does not explain. This is not what Darwin was after. What the ToE argumenters today forget is part of ToE is due to mutation and macroevolution theory.
Here's another example of what Darwin said, back in the day,
"
Origin of whales
In the first edition of "On the Origin of Species" in 1859, Charles Darwin speculated about how natural selection could cause a land mammal to turn into a whale. As a hypothetical example, Darwin used North American black bears, which were known to catch insects by swimming in the water with their mouths open:
"I can see no difficulty in a race of bears being rendered, by natural selection, more aquatic in their structure and habits, with larger and larger mouths, till a creature was produced as monstrous as a whale," he speculated.
The idea didn't go over very well with the public. Darwin was so embarrassed by the ridicule he received that the swimming-bear passage was removed from later editions of the book."
What is Darwin's Theory of Evolution?
If one can put 2 + 2 together, then they get that ToE according to Darwin, was interested in origins, mutation and macroevolution theory. (BTW livescience is wrong in their example. It isn't natural selection, but macroevolution, i.e. one species becoming another totally different species in another clade.)
Müller did not espouse any creationist or design beliefs, but his presentation demonstrated that even the most staunch advocates of evolution are forced to admit the theory has many holes. The presentation was devastating “for anyone who wants to think that, on the great questions of biological origins, orthodox evolutionary theory has got it all figured out,” Discovery Institute experts wrote on their organization’s blog.
Where is the implication that there are "many holes"? Or that anyone is forced to admit that there are "many holes"....
Nowhere.
Where does he mention origins?
Nowhere.
Who thought that evolutionary theory had "it all figured out"?
No one.
I'd have to guess that the many holes come from Darwin being wrong about many things while the ToE has evolved into ESS.
Müller’s admission offers a particularly damning critique since answers to questions about how things originated and how complexity developed form the basis for all origin theories. He also referred to the concept of macroevolution, the idea that one species can evolve into a totally different species, as “vague” and advised proponents of an expanded framework of evolution to avoid the term altogether.
This is a complete misrepresentation of Mueller's article to try to imply that there is some sort of doubt or lack of evidence for "one species evolving into a totally different species".
In the article Mueller is describing the issues that can occur due to the term "macroevolution" being ill-defined.
We'll have to agree to disagree here.
Many Christians reject the theory of macroevolution because the Bible teaches that God created everything according to its kind. Somewhat less controversial is the theory of microevolution, which refers to changes or adaptations within a species. For example, dog breeders can breed a dog that sheds less, but it’s still a dog. But they can’t breed a dog that can fly. Many evolutionists believe microevolutionary changes lead to macroevolution, but Müller admitted even evolutionary experts argue among themselves about whether microevolutionary adaptations actually produce macroevolution.
LOL, utter rubbish, this is not discussed, hinted at, or implied by Mueller. The sad thing is that creationists eat this crap up because it's what they want to hear.
Mueller admitted no such thing, it's pure propaganda.
Read what Mueller said. He's comparing today along with ESS with standard evo.
"Whereas ‘microevolution’ is regarded as the continuous change of allele frequencies within a species or population [
109], the ill-defined macroevolution concept [
36], amalgamates the issue of speciation and the origin of ‘higher taxa’ with so-called ‘major phenotypic change’ or new constructional types. Usually, a cursory acknowledgement of the problem of the origin of phenotypic characters quickly becomes a discussion of population genetic arguments about speciation, often linked to the maligned punctuated equilibria concept [
9], in order to finally dismiss any necessity for theory change. The problem of phenotypic complexity thus becomes (in)elegantly bypassed. Inevitably, the conclusion is reached that microevolutionary mechanisms are consistent with macroevolutionary phenomena [
36], even though this has very little to do with the structure and predictions of the EES. The real issue is that genetic evolution alone has been found insufficient for an adequate causal explanation of all forms of phenotypic complexity, not only of something vaguely termed ‘macroevolution’. Hence, the micro–macro distinction only serves to obscure the important issues that emerge from the current challenges to the standard theory. It should not be used in discussion of the EES, which rarely makes any allusions to macroevolution, although it is sometimes forced to do so."
Even within evolutionary circles, Müller noted, a large number of scientists recognize that the standard theory of evolution needs to be revised or replaced altogether: “A rising number of publications argue for a major revision or even a replacement of the standard theory of evolution, indicating that this cannot be dismissed as a minority view but rather is a widespread feeling among scientists and philosophers alike.”
Well, that's the point of his essay, he goes on to say...
In the present essay, I will concentrate on the arguments and debates triggered by one particular alternative to the standard theory that has become known under the term extended evolutionary synthesis (EES). This proposal for an integration of revised and additional components of evolutionary theory into a coherent explanatory framework, as recently elaborated by Laland et al.
How is incorporating new areas of research into the theory a bad thing?
The whole tone of Borg's article is that a "leading evolutionist" is somehow admitting that the theory of evolution is flawed, whereas the whole point of Mueller's article is that...
"Since the last major theoretical integration in evolutionary biology—the modern synthesis (MS) of the 1940s—the biosciences have made significant advances. The rise of molecular biology and evolutionary developmental biology, the recognition of ecological development, niche construction and multiple inheritance systems, the ‘-omics’ revolution and the science of systems biology, among other developments, have provided a wealth of new knowledge about the factors responsible for evolutionary change. Some of these results are in agreement with the standard theory and others reveal different properties of the evolutionary process. A renewed and extended theoretical synthesis, advocated by several authors in this issue, aims to unite pertinent concepts that emerge from the novel fields with elements of the standard theory."
I don't disagree.