After skimming the article, I would say that this is the important bit:
"A transposable element invaded a stretch of DNA, presumably a gene that was similar to an immunoglobulin gene or a T-cell receptor gene, and rapidly segregated the transposon sequences encoding the recombinase enzymes used for the invasion from the recognition sequences for these enzymes (Fig. 2). These remnants of the original transposon became the recombination signal sequences of immunoglobulin and T-cell receptor genes."
Evolution of the adaptive immune response - Immunobiology - NCBI Bookshelf
We are able to produce billions of different antibodies by shuffling a set number of gene segments. It is analogous to shuffling a deck of cards and then dealing out hands to each of the B-cells. The origin of this process seems to be a transposon and recombinase enzymes that transposons use.