- Dec 20, 2003
 
- 14,346
 
- 3,037
 
- Country
 - Germany
 
- Gender
 - Male
 
- Faith
 - Christian
 
- Marital Status
 - Married
 
No, they don't discard junk DNA. The comparisons are between whole genomes.
Having the same base pairs.
Which programme are you talking about/using? Smith-Waterman?
The major point was that there is never a perfect alignment even if one of high statistical value is established.
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