- Mar 16, 2004
- 22,024
- 7,364
- 60
- Faith
- Calvinist
- Marital Status
- Single
- Politics
- US-Democrat
Don't put paraphrases into block quotation format, since it misleads the reader. And you should avoid paraphrasing, since you conisistently misunderstand scientific papers, including this one.
Right, I'm always wrong, I got that part.
Correct.
Ok
That's the incorrect part. DNA is not replicated (copied into DNA) during transcirption. During transcription it is copied into RNA. Replication is a different process.
That is not what I originally said, I said I don't know how much transcript errors, point mutations...etc had to do with adaptations. That's when I was informed that transcript errors have nothing to do with mutations which is not true. Any error in the DNA strand that isn't corrected is a mutation.
I went on to say that the central dogma of Biology was DNA-transcription-RNA-translation. That's all there is to that and you guys are making a fuss about how transcription and translation and replication are different things. The fact is I have been trying to discuss molecular mechanisms that produce adaptive traits. I still don't know how much transcription errors, point mutations...etc can help organisms adapt over time.
I don't care about the distinction between replication and transcription. What I am interested in is mutations and adaptive evolution, specifically the molecular mechanisms involved.
No, Mark, I wanted to explain some basic biology to you. Your response was rudeness and an accusation that I was lying. You obviously still don't understand what I (and many other people) told you. (Note: I never said that "bp" does not mean base pair -- that's a little fantasy you cooked up yourself.)
Really? This is the statement that was made:
"The 2x10^-8/bp/generation is the number of mutation events, not the number of base pairs."
I asked you if the bp stood for base pair, you said no it stood for mutation event.
I didn't make this up, that is what you said:
http://www.evcforum.net/cgi-bin/dm.cgi?action=msg&f=9&t=97&m=76
Right. And what does this have to do with transcription, which takes place throughout the cell cycle, and which does not result in replication of DNA?
I was not interested in transcription as opposed to replication in the slightest. I'm not the one who made this into an issue, all I said was I don't know how much transcription errors, point mutations...etc can help organisms adapt. You guys have talked about nothing else since.
The first two are facts. The last three are all errors you've made from misreading the Zhang paper. The paper describes a model. In that model, indels come in all sizes. They assume that those indels that happen to be multiples of three bases will not disrupt the ORF; the others will. They also assume that point mutations (which are not indels) occur at a rate of 1x10-9/site/year. Some of those point mutations, the ones that produce a premature stop codon, will also disrupt the ORF.
A point mutation rate of 1 x 10-9/site/year,
I used an indel mutation rate of 1.1 x 10-10/site/year
I used an indel mutation rate of 1.1 x 10-10/site/year
You told me once that in each generation you had ~50 single nucleotide substitutions fixing and 7 indels fixing overall. At what rate are the mutations being fixed in the ASPM gene and how long did it take?
Don't ask me because I'm always wrong, just answer the question Steve and maybe we can talk about molecular mechanisms that create adaptations.
That's what the paper actually says. The point of the model is to demonstrate that ASPM has not experienced a loss of selective constraint, and is in fact under strong purifying selection. Since this is a point you accept, I have no clue why you have gone off on this tangent.
I'm just waiting for someone to take an interest in the ASPM gene and I have been bored stiff with the last two or three pages.
Mark, you're making a fool out of yourself. (If you want to interpret that statement as evidence that you have superior insight into biology to all the actual biologists, and that I'm only resorting to ad hominem comments because of your insight, you can do so. If you do, you'll simply be making a bigger fool out of yourself. Your call.)
Biology has nothing to do with this, it never has. This is about evolution as natural history as opposed to the Bible as redemptive history. You cannot believe both. Now as far as evolution as the change of the frequency of alleles in populations over time, that creates not problems. It's the assumption of common descent that is the 'fundamental' issue here and I refuse to accept it as an a priori self evident fact.
This has nothing to do with Biology or that is what we would be talking about.
You know many things that just aren't so.
Don't we all.
No. "In the above genomic data analyzed, 19% of the total 1019 indels are of sizes that are multiples of three nucleotides." That's from the same paragraph in the Zhang paper that you already quoted.
Ok great, all the rest are neutral or nearly neutral I guess. Maybe you can help me out with something I really don't understand. How many amino acids are different and how much time are they allowing for their accumulation?
Quite. It is certainly possible that transcription causes mutations to occur, just as recombination probably causes mutations to occur. In both cases the DNA is exposed and subject to damage during the process. The mutations are not transcription errors, however; transcription errors are mistakes in the transcript (the RNA copy), while the mutations are changes to the original DNA. And note that this is a different mutation process than the one you were talking about earlier, which occurs during DNA replication in S phase.
I never argued that they were, I just said I didn't know how much mutations had to do with adaptation. I'm not the one who made such a big deal about it, I was using 'transcription' in a very general sense not making detailed descriptions about how transcription errors create mutations.
Yes, and what you originally said was wrong. Transcript errors (that is, errors in transcripts) are not a source of mutation here.
It's not a source of mutation where? I don't know of another way of saying this Steve, I don't care!
Look, if you want to talk about how mutations of various kinds are generated that suits me just fine. I said I didn't know how much transcript errors, point mutations...etc help organisms to adapt.
That's all I said and I was not talking about transcription as opposed to replication I was just talking about mutations in general. Since then you guys have been hurling insults one right after the other.
Transcription exposes ssDNA. The most common base substitution events in the spectra of background mutations in E. coli and mammalian cells are G • C-to-A • T transitions. Fix and Glickman (28) observe that 77% of these mutations originate on the nontranscribed strand in E. coli mutants unable to repair deaminated cytosines. This suggests that the unprotected single strand in the transcription "bubble" is significantly more vulnerable to mutations than the transcribed strand, which is protected as a DNA-RNA hybrid (Fig. 1A). (A Biochemical Mechanism for Nonrandom Mutations and Evolution, TWO MECHANISMS BY WHICH TRANSCRIPTION CAN INCREASE MUTATION RATES. Journal of Bacteriology, June 2000)
I simply refuted the statement that Transcription errors have nothing to do with mutations. It's not that big of a deal and I never made any reference to transcription as opposed to replication much less argued it.
Ok, transcription and replication are two different things. So what?
Upvote
0