supersport said:
PromoterGene said:
Well, except that speciation has already been observed both in the lab as well as the field. I'm sure a pubmed search, google search, or a search using a data base from your local university could pull up the necessary articles relating to this. If I can do it, surely you can. If you're going to be lazy, then what are you doing debating science?.
Those lab experiments with bacteria are certainly not examples of RANDOM mutations since the mutations only happen in the presence of another organism...according to your dogma, mutations are to happen independent of the environment and not to the direct benefit of the organism
The above tells me that you don't know what you are talking about when it comes to DNA or mutations. To begin with, the presence or absence of other organisms isn't going to be a factor in how MOST mutations occur.
Here is a site that is created for someone whose doesn't have a background in genetics that may be useful to you.
DNA from the Beginning
Recommended as a start for queries about the nature of genes and mutations: (all animated tutorials, just a few minutes)
A gene is made of DNA
The DNA molecule is shaped like a twisted ladder
DNA "words" are 3 letters long
WHAT IS A MUTATION?
Mutations are any permanent, heritable alterations in DNA. These alterations can be simple as a single base change (most common), insertions, deletions, rearrangements of segments of varying lengths, or can involve large pieces of DNA (visible pieces of chromosomes or whole chromosomes)
Chromosomes Carry Genes
Mutations are changes in genetic information
Mutations (categories with examples)
MUTATIONS HAVE BEEN OBSERVED.....
1. First, there may be an observable change (one that you can actually see) in the
phenotype of the individual. For instance, a seed from a plant whose progeny are tall (phenotype or physical manifestation of gene expression) now has some offspring that are short as well as tall.
2. Second, if one can isolate the gene responsible for height, it is possible to take the "height gene" from the tall plant and the one from the short plant and compare the sequence to find the change. How this kind of thing is done and it's history, explained in the following animation:
A gene is a discrete sequence of DNA nucleotides
This is an image of a sequence, showing the individual bases for a gene (left) If there was a mutation, then one can compare the sequence of the mutant gene to that of the "wild type" gene to find the difference or differences between them (right).
An example of a case where as single base change can result in a dramatic change is sickle-cell anemia. (below).
Good Explanation of the sickle cell mutation from PBS: A Mutation Story--Sickle Cell Anemia
How A Sequence is Done and Interpreted (from G.A.M.E.)
3. Some mutations involve large segments of DNA (pieces of chromosome, even whole chromosomes)...............
An example of such an extensive mutation is Down's syndrome. The most common reason for this is that the person is born with 3 copies of chromsome 21 instead of just 2 (normal). That is why Down's syndrome is also called Trisomy 21 (tri- means 3).
Here is a picture of the karyotype of a male Down's sufferer showing this:
4. Some types of cancer are the result of unfortunate rearrangements between chromosomes called
translocations (2 chromosomes exchange parts). A classic case is
Burkitt's lymphoma. Here is a karyotype of a cancer cell showing the translocation between chromosome 8 and chromosome 14 (click on the link for an explanation)
5. Many cancers are the result of many different kinds of mutations (point mutations, deletions, insertions, translocations). Read about that
HERE (pdf).
MORE:
Oncogenes (Genes Involved in Causing Cancer)
Cancer (a general discussion)
Tumor Suppressor Genes
WHAT WOULD CAUSE MUTATIONS?
A. Any number of things can damage DNA in such a way as to cause mutations. They are called mutagens. If the resulting mutations cause cancer, these mutagens are also regarded as carcinogens:
- Many mutations result from copying errors by the molecules that make new copies of the DNA (also mechanisms in place that prevents or repairs most of these)
- Most mutations are the outcome of spontaneous degradation of the DNA due to the fact that it resides in a salty, aqueous environment (conditions inside the cell itself). Think of it as cellular "wear and tear" on the DNA (repair mechanisms in place that fix the vast majority of these)
- many chemicals
- UV (ultra-violet) light (why tanning is bad for you)
- X-ray
- ionizing radiation
B. There are also cellular mechanisms that can repair certain types of damage or "lesions" before it has a chance to become a mutation (a site of damage that can eventually become a mutation is called a "pre-mutational event"). Not every DNA lesion can be repaired or gets repaired in time. Here are some sites explaining a few of these mechanisms:
C.
Be aware that every attempt is made by the cell to keep the DNA from acquiring changes. Not only are there mechanisms to repair damage, the molecules that copy the DNA often have "domains" (a site on a molecule that performs a specific function) whose job it is to "proof-read" (check to make sure the base used in copying the parent strand is correct). These molecules are called DNA-polymerases.
If the genetic material being copied is RNA, it's it's generically known as an RNA-polymerase (some viruses use these). Not all polymerases have proof-reading domains. An example of this is the reverse transcriptase of the AIDS virus. This virus mutates like mad because the errors made by the transcriptase aren't corrected. Each person who develops AIDS will have a copy of the virus that is unique to him/her because of the mutations it accumulates while replicating in that person (it "evolves" in response to the immune system's attempts to keep it in check and in response to drugs used to foil it's replication).
D.
The fact that HIV mutates rapidly was used to convict a killer. Dr. Richard Schmidt was convicted of purposely injecting Janice Trayhan, a former lover, with blood tainted with HIV and hepatitis C after she called off their affair. The blood was believed to have been drawn from an HIV- and HCV-positive patient around the time of the breakup. The state's expert witnesses established that PCR-based analysis of human HIV can be used to identify HIV strains.
Although the DNA sequences used to establish the source of the infections were not identical with the sequences in the infected individuals, HIV is known to mutate rapidly. Even within an infected individual, the virus changes over time. The biological or statistical question, therefore, is how the viral sequence variation in individuals infected from a common source compares to the extent of variation among individuals infected from disparate sources. For a full explanation click on the following link:
1. Guilty Sequence (or Evolution via Phylogenetic Analysis gets its day in court)
2. Gretchen Vogel, Phylogenetic Analysis: Getting Its Day in Court, 275 Science 1559 (1997) (NOTE: this case cited in
29+ Evidences for Macroevolution
3.Ancient Remnants of Viral Infection Demonstrate Evolution Beyond a Reasonable Doubt
E.
~~RECENT DATA~~==> Scientists have reconstructed the structure of an ancestral gene. The press headline is
"Evolution reversed in mice", but that's a bad title. What the scientists did was to reconstruct a 530-million-year-old Hox gene by combining key portions of two modern mouse Hox genes that descended from this archaic gene.
A better press release about this experiment is given HERE from the University of Utah.
For those unfamilar with what Hox genes do:
The Homeobox Page
Putting on the Finishing Touches (homeobox, hox discussed)
Homeobox (Wiki)
Here's a really good explanation from Pharyngula==> Regulatory evolution of the Hox1 gene