Remember, the world awaits your reply
Ahh ha ha just when I was starting to forget how much the world hangs on my words, you had to go and remind me. >.<
But since you're also interested, I'll go ahead and give a response.
Our food and air go down the same pipe part of the way, which allows choking to happen, and our reproductive organs and waste disposal are right next to each other. These are not smart design choices, nor are they necessary.
I want you to use a bit of that rational logic that Atheists are apparently so famous for, and follow the logic to its inevitable conclusion.
Lets say that God does eliminate the problems you've listed. Then what? Surely, choking and placement of internal organs aren't the only problems. Perhaps, you'd make out a list of other problems for God to fix, and let's say he does fix them for you. At some point, you'd get to the end of the list and there would be no more problems for humans at all.
But, since a great deal of the world's problems involve
people causing problems for one another, you'd end up with no one being
able to cause problems anymore, and then where does that leave you? People unable to make any choice except the right choice, in every circumstance and situation. Congratulations on turning the human race into robots just because you feel indignant that God may expect you to actually confront, challenge, and solve problems rather than complain about them.
One of the leading causes of choking in children is hot dogs, which just happens to be a favorite food for many children. Its cylindrical shape and rounded ends make it a perfect throat plug. This is scientifically verifiable, proven, and repeatable evidence, but that doesn't stop manufacturers, grocery stores, or fast food retailers from profiting off the food. Poor God gets all the blame while humans get all the profit.
I don't get the impression that you care about choking. If I'm wrong about that, I'm fine to hear it, but at the moment it looks more like the only value you see in the argument is in how you can use it to make yourself feel better about your atheism. It's presented as an indictment against God rather than a genuine concern for people and that desire to smother any meaning or purpose behind learning and growing from the problems we face (rather than throwing a tantrum) will always stop you from appreciating just how petty the argument really is.