I'd put one of those smiley faced things here, but, to be honest with you, I hate them.
But, this is part of my point. Why is it okay to posit another force acting against an established law and multiply hypothesis that way, but not hypothesis supernaturally, especially considering my second argument and the fact that nature itself cannot account for the rationality we are using in this discussion. When I was considering these questions I found this only to be the tip of the ice berg. It seems supernatural hypothesis are superior to simply positing another force. In the end, you will end up posit forces ad nausium. So if we are going to hypothesis, why not consider all the hypothesis out there and not just ones that correspond to a closed system universe?
The reason it is okay is because, while naturalistic hypotheses retain the ability to be falfisied sometime in the future; supernatural "explanations" can never be falsified and do not even fall under the realm of science. There is a difference between protoscience and non-science. The claims of supernatural intervention belong to the latter. Naturalistic claims regarding stuff we cannot yet test, but that don't run afoul of any physical law (perhaps the Second Law is not a full explanation, like Relativity) is protoscience. Protoscience has the possibility of being tested. That is the problem with positing supernatural forces. You can claim as many things as you want you will never be able to be proven wrong.
I completely agree with your statement here, but I don't agree with your conclusion. The things we have discovered don't need God to explain them, but if science works, then it is more than slightly probable that the metaphysical hypothesis science is based upon, the metaphysical principle that the universe is an ordered and rationally functioning (for lack of a better word) entity, is also true. Modern science was the invention of a Christian society operating under the above metaphysical premise.
Giving credit for the scientific revolution to a "Christian society" is a bit of a stretch. Historically, not many people were allowed to speak out against Christianity thanks to groups like the Inquisition. Also, those scientists that did help develop the modern scientific method did not use their religious beliefs to help sculpt it. I just don't think it's really fair to give Christianity the credit for something that just happened to develop during it's 2000-some year reign. It was the minds of brilliant men, and not some God, who developed the scientific method. You can feel free to add that some God is behind the order of the universe; my problem with that is that it is unnecessary. There is no need to add a God (aside from the classical [and fallacious] argument from ignorance "we don't know - therefore God is a reasonable answer"). Occam's Razor tells us that when we have a naturalistic explanation, we have no need for a supernatural one. It's superfluous. Regarding our lack of knowledge of cosmology now, I think history has demonstrated that gaps in knowledge are very quickly filled. All that we need are the right tools to analyze the issues and we can solve them. Simply positing a supernatural force because we don't yet have the answer is not something any scientist would do.
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