OK, I 'll take a closer look at that section.
So here is my more extensive commentary on that article. Btw, I found today the link would not work any more. I don't know if that is a temporary glitch or if it has been removed.
May as well complete commentary on the intro, then look at the rest of the paper.
You will recall that his first 3 flaws in Darwinism were
"Gradual evolution is not backed up by fossil records"
Evolutionary progress is not a random process."
Gene mutation is not the main overall mechanism of evolution."
These are all standard creationist canards frequently found in anti-evolution literature (including the frequent use of Darwinism instead of referencing theory of evolution to convey the notion that evolution is not science at all.) They are all, to say the least, misrepresentations and distortions of evolutionary theory and hence they are all examples of strawman fallacy.
His remaining three flaws are:
Natural selection is a vague term and should be better replaced with a concrete physico-chemical mechanism.
The notion of common origin from a last common ancestor cell may be the most erroneous guess.
Current mainstream evolutionary theories separated the evolution of Earth from the evolution of life.
The first two are new to me, but make no sense at all.
Natural selection refers to the statistically preferential survival and/or reproduction of organisms whose traits provide a benefit in current ecological conditions as compared to other members of the population group with a different variant of the trait (or lack it altogether). How statistics can be replaced with a physico-chemical mechanism mystifies me. Understood as a statisical phenomenon, the term is precise, not vague.
The next flaw boggles my mind. At first I couldnt believe he really meant the last common ancestor was a single individual cell, but apparently that is exactly what he means. I cant fathom where he got such a ridiculous idea. LUCA has always been thought of in evolutionary theory as a population, not one cell. Also, he conflates LUCA with earliest life form as if they were the same thing, and as we will see, this vitiates the new perspective on evolution he presents.
The last is the old Kent Hovind ploy of equivocating the general meaning of evolution with the theory of evolution. Evolution can refer to any sort of gradual change over time, e.g. the evolution of democracy or the evolution of computers. It is so used in other fields of science. Astronomy speaks of stellar evolution and chemists of chemical evolution. But the theory of evolution is specifically about the appearance and changing distribution of genetic alleles in a self-reproducing population. There is no self-reproduction in chemistry or stars so the theory of evolution is not relevant to them.
OK, so I am coming now to the central thesis of the paper. Mostly it is about thermodynamics and energy exchange (which I guess is really much the same thing). In any case it is physics, and physics is so mathematical that it is mostly beyond me.
What is clearly evident is that the bulk of this section doesnt refer to Darwinian evolution at all, but to abiogenesis i.e. the emergence of biotic entities from the abiotic environment. This confusion of the evolution of species with the original origin of life is again typical of much anti-evolution literature. The origin of life from an abiotic environment falls primarily into the area of chemistry. You cant get any Darwinian evolution until chemical processes produce a self-replicating molecule. And it is a long way from there to the first cellular life.
The absence of comment on the constraints imposed by inheritance is to be noted.
Section 1 I have no problem with, so long as one doesnt confuse the various levels of evolution or their mechanisms. I understand that the properties of sub-atomic particles in a favorable environment would inevitably produce atoms. I know about heavier atoms needing a nova or super-nova to bring them into existence. The properties of atoms, in turn, generate chemical reactions, and again, for most chemical reactions (certainly those needed in life) an appropriate environment, often including a catalyst is needed. Chemical bonding of atoms in patterns dictated by their physical, electrical, etc. properties gives us a world of molecules which in turn interact and can produce highly complex moleculesmolecules of the sort that become important in abiogenesis.
All this is a given for biology. But none of this is Darwinian evolution, because there exists at this stage, no mechanism of self-replication. So it is basically irrelevant to the theory of evolution and UCA issues.
The second section mystifies me. I cant figure out what point he wants to make. The headline is non-controversial. Biological evolution obeys not only biological but also chemical and physical laws. That includes the laws of thermodynamics. He correctly states that biological evolution is not rendered impossible by the second law of thermodynamics, (as many ill-informed anti-evolutionists have contended), but then he concludes by saying: Thus, I still firmly believe that any theory claiming to describe how organisms originate and continue to exist by natural causes must be compatible with the first and second laws of thermodynamics. as if there were some doubt that either abiogenesis or biological evolution does.
Sections 3 & 4 seem to me to be uncontroversial though that may be an indication of how little I know of chemistry and abiogenesis. I would love to see what a person doing research on abiogenesis would make of this paper.
Section 5 is where the paper starts really going off the rails. The heading seems to be non-controversial: . Life forms had originated at multiple places and may have arisen multiple times.
I think it is almost a given among scientists that once self-replicators existed, life probably originated many times, but in most instances failed to survive.
The author goes on to claim: Life forms, even the same form of life, can be formed at multiple locations on Earth as long as the environmental conditions that favored their formation are the same.
As long as he is restricting this to the context of abiogenesis, no problem. Sure, since chemistry is chemistry, any particular molecule, including a self-replicator, is going to be formed whenever and wherever conditions favour its formation. But things get a little stickier as more complex biochemical processes emerge. Could the same hypercycle (a proposed intermediary step between simple self-replicators and cells) also emerge whenever and wherever the environmental conditions favour it? Maybe, but its less probable. What about simple virus-like levels of organisation when some RNA or DNA molecules are enclosed in a proteinaceous or bilipid membrane. At this stage we definitely have inheritance, mutation and natural selection affecting outcomes. So the possibility of a new life form with the same genetic makeup as an inherited and mutated genome drops rapidly to near zero.
So I was astounded when I got to the concluding section in which he asserts that this principle applies not just at the interface of abiotic and biotic communities at the origin of life, but throughout the whole history of life, including complex, multicellular organisms.
No waythat just aint gonna happen.
That is why it is significant that he makes no reference to inheritance. Nor to comparative analysis of genomes.
Again, sections 6 & 7 seem uncontroversial to me, except for phrases suggesting strawman refutations.
So, contrary to his assertions, as far as I can see he hasnt presented any new perspective on evolution (at least not on Darwinian evolution), though he may have made some contribution to work on abiogenesis. The lack of attention to his paper would suggest otherwise.
I dont doubt he sees his thesis contradicting fundamental assumptions of the theory of evolution, but his initial presentation of Darwinian theory was riddled with fundamental errors. So what he is really contradicting is a straw man of his own construction.
His remarks on evidence contradicting Darwinism is more creationist claptrap. He even repeats the old missing links are still missing mumbo-jumbo.
CC200: Transitional fossils (I havent seen the acronym for a while, but it used to be common to refer to such claims as PRATTs or Points Refuted A Thousand Times because they were repeated so frequentlyoften by the same person who had received the refutation earlier but just blithely ignored it.) It also appears that he thinks co-evolution and parallel evolution are the same thing. Sheer ignorance
His final word is this:
The central position of this new perspective on evolution is that cellular life forms might have multiple independent origins that were rooted in different acellular forms. The formation and evolution of life is not random but abides some physico-chemical principles. Each independently originated cellular life form may evolve under separate phylogenetic lineages and may also interact with each other to form more complex higher order life forms. Thus, the images of the life history as reflected by the later reconstruction efforts may appear as mosaics and show some pattern pluralisms.
I dont think anyone would have a problem with a thesis on the multiple origins of life forms and/or cellular life. And as he says, each of these may evolve under separate phylogentic lineages and interact with each other.
The problem is that the actual phylogenetic data points to such separately originating lineages as being restricted to the earliest era of life on earth. He seems to be suggesting that these separate lineages continued for much longer and may even still be present today. But there are many indications that of the several lineages that may have appeared as life emerged from the abiotic environment only one survived to beome the progenitor of all extant life.
If this is the case, the appearance of genetic mosaics and pattern pluralisms as investigation approaches the LUCA is not an indication of the non-existence of the LUCA, but merely of the contemporaneous existence of other populations whose lineages did not survive to the present.
So, what it looks like to me is that he may be on to something regarding the conditions under which life originated in an abiotic environmentthere is no way I am competent to judge that one way or another. But he chose to wrap that around with a lot of meaningless and erroneous drivel about Darwinian evolution. His understanding of biological evolution is fundamentally flawed so most of his commentary in the introduction and conclusion consists of strawman arguments against invented assertions he wrongly attributes to evolutionary theory. He also seems to be completely ignorant of the case for universal common ancestry as he makes no reference to the evidence and no attempt to show how his new perspective would account for it.
I am not at all surprised that this level of incompetence was ignored by the scientific community; indeed I am surprised it got published at all, and wonder if it was published in an unorthodox manner (which would explain the difference in time between his thesis and the publication date).