First I would have thought all the papers I have supplied stating that natural selection cannot produce gene networks and that other non adaptive forces were more responsible was enough evidence. That evidence shows that the mechanisms for building the gene structures for life are not from a blind process of natural selection but from processes that use developmental pathways that are designed to produce certain specific results that organisms need to function and survive. But there is also evidence for which I have supplied in the recent past showing that complex Protein sequences need many positive mutations sometimes multiple mutations all working together to build them.
A blind process of natural selection and random mutations has been shown that it is unlikely to be able to do this because it has to sift through a vast amount of possibilities which include many negative dysfunctional possibilities and that any small benefit gets side tracked and lost and never becomes enough of a distinct benefit to build those complex structures. This also relates to the evidence of non adaptive forces being more responsible because they dont rely on this blind process and work on developmental pathways that are determined by mechanisms that point to preset structures and info.
The other evidence comes from research that shows that proteins for life show more qualities of being preset forms and structures rather than the results of a hit and miss process of evolution. The structures are very precise and complex and evolution has no evidence or can even attempt to explain how these would be produced from a blind and random process. It would either be impossible or even if evolution could produce some small functional structures it would take more time that what is available to do.
However, in the case of one class of very important organic forms-the basic protein folds-advances in protein chemistry since the early 1970s have revealed that they represent a finite set of natural forms, determined by a number of generative constructional rules, like those which govern the formation of atoms or crystals, in which functional adaptations are clearly secondary modifications of primary "givens of physics." The folds are evidently determined by natural law, not natural selection, and are "lawful forms" in the Platonic and pre-Darwinian sense of the word, which are bound to occur everywhere in the universe where the same 20 amino acids are used for their construction. We argue that this is a major discovery which has many important implications regarding the origin of proteins, the origin of life and the fundamental nature of organic form. We speculate that it is unlikely that the folds will prove to be the only case in nature where a set of complex organic forms is determined by natural law, and suggest that natural law may have played a far greater role in the origin and evolution of life than is currently assumed.
http://www.ncbi.nlm.nih.gov/pubmed/12419661
According to this model, (a) the Universal Genome that encodes all major developmental programs essential for various phyla of Metazoa emerged in a unicellular or a primitive multicellular organism shortly before the Cambrian period; (b) The Metazoan phyla, all having similar genomes, are nonetheless so distinct because they utilize specific combinations of developmental programs. This model has two major predictions, first that a significant fraction of genetic information in lower taxons must be functionally useless but becomes useful in higher taxons, and second that one should be able to turn on in lower taxons some of the complex latent developmental programs, e.g., a program of eye development or antibody synthesis in sea urchin. An example of natural turning on of a complex latent program in a lower taxon is discussed.
http://www.ncbi.nlm.nih.gov/pubmed/17660714
Our purpose here is to introduce a new route to functional complexity, a route in which complexity starts high, rising perhaps on account of the spontaneous tendency for parts to differentiate. Then, driven by selection for effective and efficient function, complexity decreases over time. Eventually, the result is a system that is highly functional and retains considerable residual complexity, enough to impress us.
http://link.springer.com/article/10.1007/s11692-013-9227-6
Why would listing other organisms disprove that these examples can be designed. Design doesn't state that there wont be non similar patterns. We could probably find another bunch of different patterns in nature that have similarities with non related organisms or physical structures. I am just saying that these particular patterns look designed in the way humans determine design and are found in things that dont stem from each other according to self creating naturalistic processes as though that particular pattern is a pre set pattern.