Now you're confusing order with organized complexity. ( in case you missed it in the article ) Isaak argues that Creationists try to “get around” something by claiming that “the information carried by living things lets them create order...but order from disorder is common in nonliving systems, too. Snowflakes, sand dunes, tornadoes, stalactites, graded river beds, and lightning are just a few examples of order coming from disorder in nature; none require an intelligent program to achieve that order.”
What Isaak says here reveals some confusion on his part,between simple “order” and “organized complexity.” All living things (down to even a single-celled organism) are highly complex and organized—each component in its proper place and functioning according to its instructions to keep the organism going. They don’t just “happen” in nature—the notion of spontaneous generation was long ago and often disproven [Redi (1688), Spallanzani (1780), Pasteur (1860), and Virchow (1858)], establishing the Law of Biogenesis, which remains confirmed in that man has never observed life coming from anything but life itself, which is not observed to exist at all without all of the above described factors in place in some form.
On the other hand, simple “order” such as that found in a snowflake or a crystal, for example, is exceedingly trivial, when compared to the increase in information, organization or complexity that would be required for either spontaneous generation (the beginning of biological evolution), or any form of progressive macro-evolution itself. The formation of molecules or atoms into geometric patterns such as snowflakes or crystals reflects movement towards equilibrium—a lower energy level, and a more stable arrangement of the molecules or atoms into simple, uniform, repeating structural patterns with minimal complexity, and no function. Living things, on the other hand, do not arrive at and maintain their high levels of order, organization, and complexity in order to achieve thermodynamic equilibrium, but are in fact maintaining far from equilibrium conditions in order to arrive at and maintain those levels.
Thus, crystals are not examples of matter forming itself into more organized or more complex structures or systems even remotely parallel to those inherent in living organisms, even though they may certainly reflect “order” in the form of patterns (the very structure of which is both enabled and limited by the molecules which comprise them), and they certainly cannot serve realistically as “proof” that life can therefore create itself.
To so erroneously equate mere passive “order” of molecules as they enter a state of energy equilibrium (e.g., the formation of crystals) with a spontaneous, self-induced increase in “organized complexity” (as demanded by evolutionary theory for both the beginning and development of life—and as prohibited by the 2nd law), is to truly misunderstand the 2nd law AND evolution. This seems to be exactly what Isaak has done.
Jeffrey Wicken (an evolutionist) does recognize the difference, however, having described it this way:
“‘Organized’ systems are to be carefully distinguished from ‘ordered’ systems. Neither kind of system is ‘random,’ but whereas ordered systems are generated according to simple algorithms and therefore lack complexity, organized systems must be assembled element by element according to an external ‘wiring diagram’ with a high information content ... Organization, then, is functional complexity and carries information. It is non-random by design or by selection, rather than by the a priori necessity of crystallographic ‘order.’” [Jeffrey S. Wicken, The Generation of Complexity in Evolution: A Thermodynamic and Information-Theoretical Discussion,Journal of Theoretical Biology, Vol. 77 (April 1979), p. 349]
Nobel Prize winner Ilya Prigogine also has no problem defining the difference, even acknowledging the extreme unlikelihood that the requisite complexity for life could arise from non-life:
“The point is that in a non-isolated [open] system there exists a possibility for formation of ordered, low-entropy structures at sufficiently low temperatures. This ordering principle is responsible for the appearance of ordered structures such as crystals as well as for the phenomena of phase transitions. Unfortunately this principle cannot explain the formation of biological structures. The probability that at ordinary temperatures a macroscopic number of molecules is assembled to give rise to the highly ordered structures and to the coordinated functions characterizing living organisms is vanishingly small.” [I. Prigogine, G. Nicolas and A. Babloyants, Physics Today 25(11):23 (1972)]
Thaxton, Bradley, and Olsen make the same clear distinction:
“As ice forms, energy (80 calories/gm) is liberated to the surroundings... The entropy change is negative because the thermal configuration entropy (or disorder) of water is greater than that of ice, which is a highly ordered crystal... It has often been argued by analogy to water crystallizing to ice that simple monomers may polymerize into complex molecules such as protein and DNA. The analogy is clearly inappropriate, however... The atomic bonding forces draw water molecules into an orderly crystalline array when the thermal agitation (or entropy driving force) is made sufficiently small by lowering the temperature. Organic monomers such as amino acids resist combining at all at any temperature, however, much less in some orderly arrangement.” [C.B. Thaxton, W.L. Bradley, and R.L. Olsen, The Mystery of Life’s Origin: Reassessing Current Theories, Philosophical Library, New York, 1984, pp. 119-120.]
Isaak asks, “If order from disorder is supposed to violate the 2nd law of thermodynamics, why is it ubiquitous in nature?” By now it should be clear to any objective reader that Isaak’s logic is faulty:
1. his assumption that “order from disorder” is “ubiquitous in nature” is an error 2. life’s “order” (better described as “organized complexity”

is possible only because of life’s inherent information and energy conversion mechanisms 3. the “order” found in non-living natural structures is not simply due to an unaided decrease in entropy, but to a decrease in molecular or atomic energy level, due to external factors (usually temperature and the existing molecular structure of the elements involved).