The Chaplain's comments are a classic example of Republican first, Catholic second. Hopefully this type of Catholicism is on it's way out.
Ave Maria University was founded by this faction, though, and obviously will hold on as long as they can, which may not be much longer if questions raised about their educational program and the quality of their degrees in the workplace are not answered.
I can tell you that Trump is really a dividing line. There's really no way even people who only believe two issues are important, issues that happen to nominally line up with the Republican Party's politics, can justify voting for Trump on religious grounds. This guy is as seedy as they come. Clergy who come out in support of him are telling you what's important to them, and it has nothing to do with religious faith.
If Trump takes power, I think we will look back on his enablers within the Church in a similar way as people look back on Catholic bishops and Cardinals who signed the letter welcoming Hitler into Austria.