Doctors do look at those things. I mean, seriously, do people who oppose vaccines think that their doctor just doesn't give a rat's behind about them?Figure out what the triggers are and test for them. See if there is a family history. Be more cautious in administering vaccines (smaller doses spread out, for example). Only mandate for the most serious diseases, not every disease for which there is a vaccine (the rest being optional or dependant on the situation). Delay some vaccinations until the immune system is stronger.
There's plenty that can be done, and may actually be done as far as I know. But this 'everyone should be vaccinated for everything and you're evil for questioning it at all' mentality needs to stop.
It's a known fact that vaccines kill people. Not many people, and it's a smaller proportion than would die without vaccines. But they will die. It's entirely reasonable for parents to be precautious and insist that everything is done as safely and that their children are going to be okay with receiving the vaccines.
What we don't need is hysterical reactions like saying parents should have their children taken from them because they don't get them vaccinated. Ultimately, they are trying to protect their children. While they may be misguided in what they believe, the intent is still good. Education is the key to fight anti-vaxers, nor threats. And more research into decreasing the odds of negative reactions to vaccines to easy the worries of those with legitimate concerns.
Fine, how about this? Charge them with a crime if their child spreads an illness to another child who was unable to be vaccinated? If it can be proven, they get to pay a fine/sit in jail and think about their amazingly stupid decision.
As I said though, if I were dictator. I really don't care what their reasoning would be at that point.
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